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Cluster: ShaoY_2019_ERR3405869_bin.2_CGC9

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC ShaoY_2019_ERR3405869_bin.2_k141_3513 ShaoY_2019_ERR3405869_bin.2_k141_3513_32 37981 38610 - 2.A.115.2.7
TF ShaoY_2019_ERR3405869_bin.2_k141_3513 ShaoY_2019_ERR3405869_bin.2_k141_3513_33 38603 40510 - HTH_11 | Mga
CAZyme ShaoY_2019_ERR3405869_bin.2_k141_3513 ShaoY_2019_ERR3405869_bin.2_k141_3513_34 40622 42067 - GH1
pfam ShaoY_2019_ERR3405869_bin.2_k141_3513 ShaoY_2019_ERR3405869_bin.2_k141_3513_35 42083 42427 - PTS_IIA
TC ShaoY_2019_ERR3405869_bin.2_k141_3513 ShaoY_2019_ERR3405869_bin.2_k141_3513_36 42442 43728 - 4.A.3.1.3
TC ShaoY_2019_ERR3405869_bin.2_k141_3513 ShaoY_2019_ERR3405869_bin.2_k141_3513_37 43732 44040 - 4.A.3.2.3
CAZyme ShaoY_2019_ERR3405869_bin.2_k141_3513 ShaoY_2019_ERR3405869_bin.2_k141_3513_38 44180 44956 - CE1
Gene ID: ShaoY_2019_ERR3405869_bin.2_k141_3513_32
Type: TC
Location: 37981 - 38610 (-)
Gene ID: ShaoY_2019_ERR3405869_bin.2_k141_3513_33
Type: TF
Location: 38603 - 40510 (-)
Gene ID: ShaoY_2019_ERR3405869_bin.2_k141_3513_34
Type: CAZyme
Location: 40622 - 42067 (-)
Gene ID: ShaoY_2019_ERR3405869_bin.2_k141_3513_35
Type: pfam
Location: 42083 - 42427 (-)
Gene ID: ShaoY_2019_ERR3405869_bin.2_k141_3513_36
Type: TC
Location: 42442 - 43728 (-)
Gene ID: ShaoY_2019_ERR3405869_bin.2_k141_3513_37
Type: TC
Location: 43732 - 44040 (-)
Gene ID: ShaoY_2019_ERR3405869_bin.2_k141_3513_38
Type: CAZyme
Location: 44180 - 44956 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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