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Cluster: ShaoY_2019_ERR3405869_bin.2_CGC7

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC ShaoY_2019_ERR3405869_bin.2_k141_2438 ShaoY_2019_ERR3405869_bin.2_k141_2438_209 237075 238463 - 2.A.3.7.7
pfam ShaoY_2019_ERR3405869_bin.2_k141_2438 ShaoY_2019_ERR3405869_bin.2_k141_2438_210 238573 239607 - OTCace | OTCace_N
TC ShaoY_2019_ERR3405869_bin.2_k141_2438 ShaoY_2019_ERR3405869_bin.2_k141_2438_211 240002 240703 + 9.B.20.1.4
TF ShaoY_2019_ERR3405869_bin.2_k141_2438 ShaoY_2019_ERR3405869_bin.2_k141_2438_212 240759 241628 + HTH_8
peptidase ShaoY_2019_ERR3405869_bin.2_k141_2438 ShaoY_2019_ERR3405869_bin.2_k141_2438_213 241689 242891 - M20.UND
TC ShaoY_2019_ERR3405869_bin.2_k141_2438 ShaoY_2019_ERR3405869_bin.2_k141_2438_214 242976 243818 - 3.A.1.24.6
TC ShaoY_2019_ERR3405869_bin.2_k141_2438 ShaoY_2019_ERR3405869_bin.2_k141_2438_215 243847 244527 - 3.A.1.24.6
TC ShaoY_2019_ERR3405869_bin.2_k141_2438 ShaoY_2019_ERR3405869_bin.2_k141_2438_216 244529 245599 - 3.A.1.24.6
TC ShaoY_2019_ERR3405869_bin.2_k141_2438 ShaoY_2019_ERR3405869_bin.2_k141_2438_217 246523 247632 + 3.A.1.1.20
TC ShaoY_2019_ERR3405869_bin.2_k141_2438 ShaoY_2019_ERR3405869_bin.2_k141_2438_218 247797 249137 - 4.A.3.2.8
NULL(UNKNOWN) ShaoY_2019_ERR3405869_bin.2_k141_2438 ShaoY_2019_ERR3405869_bin.2_k141_2438_219 249152 249655 - NULL(UNKNOWN)
[View Structural Homologs]
TC ShaoY_2019_ERR3405869_bin.2_k141_2438 ShaoY_2019_ERR3405869_bin.2_k141_2438_220 249670 250023 - 4.A.3.2.8
TF ShaoY_2019_ERR3405869_bin.2_k141_2438 ShaoY_2019_ERR3405869_bin.2_k141_2438_221 250043 252025 - HTH_11 | Mga
TC ShaoY_2019_ERR3405869_bin.2_k141_2438 ShaoY_2019_ERR3405869_bin.2_k141_2438_222 252042 252356 - 4.A.3.2.6
CAZyme ShaoY_2019_ERR3405869_bin.2_k141_2438 ShaoY_2019_ERR3405869_bin.2_k141_2438_223 252380 253813 - GH1
Gene ID: ShaoY_2019_ERR3405869_bin.2_k141_2438_209
Type: TC
Location: 237075 - 238463 (-)
Gene ID: ShaoY_2019_ERR3405869_bin.2_k141_2438_210
Type: pfam
Location: 238573 - 239607 (-)
Gene ID: ShaoY_2019_ERR3405869_bin.2_k141_2438_211
Type: TC
Location: 240002 - 240703 (+)
Gene ID: ShaoY_2019_ERR3405869_bin.2_k141_2438_212
Type: TF
Location: 240759 - 241628 (+)
Gene ID: ShaoY_2019_ERR3405869_bin.2_k141_2438_213
Type: peptidase
Location: 241689 - 242891 (-)
Gene ID: ShaoY_2019_ERR3405869_bin.2_k141_2438_214
Type: TC
Location: 242976 - 243818 (-)
Gene ID: ShaoY_2019_ERR3405869_bin.2_k141_2438_215
Type: TC
Location: 243847 - 244527 (-)
Gene ID: ShaoY_2019_ERR3405869_bin.2_k141_2438_216
Type: TC
Location: 244529 - 245599 (-)
Gene ID: ShaoY_2019_ERR3405869_bin.2_k141_2438_217
Type: TC
Location: 246523 - 247632 (+)
Gene ID: ShaoY_2019_ERR3405869_bin.2_k141_2438_218
Type: TC
Location: 247797 - 249137 (-)
Gene ID: ShaoY_2019_ERR3405869_bin.2_k141_2438_219
Type:
Location: 249152 - 249655 (-)
Gene ID: ShaoY_2019_ERR3405869_bin.2_k141_2438_220
Type: TC
Location: 249670 - 250023 (-)
Gene ID: ShaoY_2019_ERR3405869_bin.2_k141_2438_221
Type: TF
Location: 250043 - 252025 (-)
Gene ID: ShaoY_2019_ERR3405869_bin.2_k141_2438_222
Type: TC
Location: 252042 - 252356 (-)
Gene ID: ShaoY_2019_ERR3405869_bin.2_k141_2438_223
Type: CAZyme
Location: 252380 - 253813 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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