Cluster: ShaoY_2019_ERR3405869_bin.2_CGC4
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 3
- Substrate:
- Genome ID: ShaoY_2019_ERR3405869_bin.2
- CGC Family ID: CGCFAM_01959
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | ShaoY_2019_ERR3405869_bin.2_k141_2438 | ShaoY_2019_ERR3405869_bin.2_k141_2438_57 | 59869 | 61329 | - | GH1 |
| CAZyme | ShaoY_2019_ERR3405869_bin.2_k141_2438 | ShaoY_2019_ERR3405869_bin.2_k141_2438_58 | 61418 | 62851 | - | GH1 |
| CAZyme | ShaoY_2019_ERR3405869_bin.2_k141_2438 | ShaoY_2019_ERR3405869_bin.2_k141_2438_59 | 62947 | 64335 | - | GH4 |
| TF | ShaoY_2019_ERR3405869_bin.2_k141_2438 | ShaoY_2019_ERR3405869_bin.2_k141_2438_60 | 64515 | 65429 | + | HTH_6 |
| TC | ShaoY_2019_ERR3405869_bin.2_k141_2438 | ShaoY_2019_ERR3405869_bin.2_k141_2438_61 | 65493 | 67397 | - | 4.A.1.2.6 |
| pfam | ShaoY_2019_ERR3405869_bin.2_k141_2438 | ShaoY_2019_ERR3405869_bin.2_k141_2438_62 | 67418 | 68287 | - | PRD | PRD | CAT_RBD |
| TC | ShaoY_2019_ERR3405869_bin.2_k141_2438 | ShaoY_2019_ERR3405869_bin.2_k141_2438_63 | 68678 | 70453 | - | 3.A.1.106.8 |
| TC | ShaoY_2019_ERR3405869_bin.2_k141_2438 | ShaoY_2019_ERR3405869_bin.2_k141_2438_64 | 70453 | 72204 | - | 3.A.1.106.8 |
Gene ID: ShaoY_2019_ERR3405869_bin.2_k141_2438_57
Type: CAZyme
Location: 59869 - 61329 (-)
Type: CAZyme
Location: 59869 - 61329 (-)
Gene ID: ShaoY_2019_ERR3405869_bin.2_k141_2438_58
Type: CAZyme
Location: 61418 - 62851 (-)
Type: CAZyme
Location: 61418 - 62851 (-)
Gene ID: ShaoY_2019_ERR3405869_bin.2_k141_2438_59
Type: CAZyme
Location: 62947 - 64335 (-)
Type: CAZyme
Location: 62947 - 64335 (-)
Gene ID: ShaoY_2019_ERR3405869_bin.2_k141_2438_60
Type: TF
Location: 64515 - 65429 (+)
Type: TF
Location: 64515 - 65429 (+)
Gene ID: ShaoY_2019_ERR3405869_bin.2_k141_2438_61
Type: TC
Location: 65493 - 67397 (-)
Type: TC
Location: 65493 - 67397 (-)
Gene ID: ShaoY_2019_ERR3405869_bin.2_k141_2438_62
Type: pfam
Location: 67418 - 68287 (-)
Type: pfam
Location: 67418 - 68287 (-)
Gene ID: ShaoY_2019_ERR3405869_bin.2_k141_2438_63
Type: TC
Location: 68678 - 70453 (-)
Type: TC
Location: 68678 - 70453 (-)
Gene ID: ShaoY_2019_ERR3405869_bin.2_k141_2438_64
Type: TC
Location: 70453 - 72204 (-)
Type: TC
Location: 70453 - 72204 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Enterococcaceae
Genus
Enterococcus_C
Species
Enterococcus_C myersii
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.