Cluster: ShaoY_2019_ERR3405869_bin.2_CGC35
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 2
- Substrate:
- Genome ID: ShaoY_2019_ERR3405869_bin.2
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | ShaoY_2019_ERR3405869_bin.2_k141_8088 | ShaoY_2019_ERR3405869_bin.2_k141_8088_294 | 296503 | 298635 | - | GH92 |
| pfam | ShaoY_2019_ERR3405869_bin.2_k141_8088 | ShaoY_2019_ERR3405869_bin.2_k141_8088_295 | 298666 | 299295 | - | DUF624 |
| TC | ShaoY_2019_ERR3405869_bin.2_k141_8088 | ShaoY_2019_ERR3405869_bin.2_k141_8088_296 | 299301 | 300203 | - | 3.A.1.1.10 |
| TC | ShaoY_2019_ERR3405869_bin.2_k141_8088 | ShaoY_2019_ERR3405869_bin.2_k141_8088_297 | 300222 | 301199 | - | 3.A.1.1.10 |
| TC | ShaoY_2019_ERR3405869_bin.2_k141_8088 | ShaoY_2019_ERR3405869_bin.2_k141_8088_298 | 301350 | 302927 | - | 3.A.1.1.9 |
| CAZyme | ShaoY_2019_ERR3405869_bin.2_k141_8088 | ShaoY_2019_ERR3405869_bin.2_k141_8088_299 | 302996 | 304825 | - | GH2 |
| TF | ShaoY_2019_ERR3405869_bin.2_k141_8088 | ShaoY_2019_ERR3405869_bin.2_k141_8088_300 | 305069 | 305974 | + | HTH_5 |
| TC | ShaoY_2019_ERR3405869_bin.2_k141_8088 | ShaoY_2019_ERR3405869_bin.2_k141_8088_301 | 306267 | 307340 | - | 3.A.1.11.7 |
| TC | ShaoY_2019_ERR3405869_bin.2_k141_8088 | ShaoY_2019_ERR3405869_bin.2_k141_8088_302 | 307337 | 308176 | - | 3.A.1.11.7 |
| TC | ShaoY_2019_ERR3405869_bin.2_k141_8088 | ShaoY_2019_ERR3405869_bin.2_k141_8088_303 | 308173 | 308982 | - | 3.A.1.11.7 |
| TC | ShaoY_2019_ERR3405869_bin.2_k141_8088 | ShaoY_2019_ERR3405869_bin.2_k141_8088_304 | 308994 | 310082 | - | 3.A.1.11.7 |
Gene ID: ShaoY_2019_ERR3405869_bin.2_k141_8088_294
Type: CAZyme
Location: 296503 - 298635 (-)
Type: CAZyme
Location: 296503 - 298635 (-)
Gene ID: ShaoY_2019_ERR3405869_bin.2_k141_8088_295
Type: pfam
Location: 298666 - 299295 (-)
Type: pfam
Location: 298666 - 299295 (-)
Gene ID: ShaoY_2019_ERR3405869_bin.2_k141_8088_296
Type: TC
Location: 299301 - 300203 (-)
Type: TC
Location: 299301 - 300203 (-)
Gene ID: ShaoY_2019_ERR3405869_bin.2_k141_8088_297
Type: TC
Location: 300222 - 301199 (-)
Type: TC
Location: 300222 - 301199 (-)
Gene ID: ShaoY_2019_ERR3405869_bin.2_k141_8088_298
Type: TC
Location: 301350 - 302927 (-)
Type: TC
Location: 301350 - 302927 (-)
Gene ID: ShaoY_2019_ERR3405869_bin.2_k141_8088_299
Type: CAZyme
Location: 302996 - 304825 (-)
Type: CAZyme
Location: 302996 - 304825 (-)
Gene ID: ShaoY_2019_ERR3405869_bin.2_k141_8088_300
Type: TF
Location: 305069 - 305974 (+)
Type: TF
Location: 305069 - 305974 (+)
Gene ID: ShaoY_2019_ERR3405869_bin.2_k141_8088_301
Type: TC
Location: 306267 - 307340 (-)
Type: TC
Location: 306267 - 307340 (-)
Gene ID: ShaoY_2019_ERR3405869_bin.2_k141_8088_302
Type: TC
Location: 307337 - 308176 (-)
Type: TC
Location: 307337 - 308176 (-)
Gene ID: ShaoY_2019_ERR3405869_bin.2_k141_8088_303
Type: TC
Location: 308173 - 308982 (-)
Type: TC
Location: 308173 - 308982 (-)
Gene ID: ShaoY_2019_ERR3405869_bin.2_k141_8088_304
Type: TC
Location: 308994 - 310082 (-)
Type: TC
Location: 308994 - 310082 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Enterococcaceae
Genus
Enterococcus_C
Species
Enterococcus_C myersii
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.