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Cluster: ShaoY_2019_ERR3405869_bin.2_CGC3

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC ShaoY_2019_ERR3405869_bin.2_k141_2161 ShaoY_2019_ERR3405869_bin.2_k141_2161_287 322421 323377 - 2.A.85.5.1
TC ShaoY_2019_ERR3405869_bin.2_k141_2161 ShaoY_2019_ERR3405869_bin.2_k141_2161_288 323519 324124 + 2.A.85.4.3
TC ShaoY_2019_ERR3405869_bin.2_k141_2161 ShaoY_2019_ERR3405869_bin.2_k141_2161_289 324141 325271 - 3.B.1.1.2
pfam ShaoY_2019_ERR3405869_bin.2_k141_2161 ShaoY_2019_ERR3405869_bin.2_k141_2161_290 325264 325389 - OAD_gamma
TC ShaoY_2019_ERR3405869_bin.2_k141_2161 ShaoY_2019_ERR3405869_bin.2_k141_2161_291 325529 328891 - 3.A.1.137.2
TC ShaoY_2019_ERR3405869_bin.2_k141_2161 ShaoY_2019_ERR3405869_bin.2_k141_2161_292 328899 329600 - 3.A.1.122.14
CAZyme ShaoY_2019_ERR3405869_bin.2_k141_2161 ShaoY_2019_ERR3405869_bin.2_k141_2161_293 329788 330936 - CE9
Gene ID: ShaoY_2019_ERR3405869_bin.2_k141_2161_287
Type: TC
Location: 322421 - 323377 (-)
Gene ID: ShaoY_2019_ERR3405869_bin.2_k141_2161_288
Type: TC
Location: 323519 - 324124 (+)
Gene ID: ShaoY_2019_ERR3405869_bin.2_k141_2161_289
Type: TC
Location: 324141 - 325271 (-)
Gene ID: ShaoY_2019_ERR3405869_bin.2_k141_2161_290
Type: pfam
Location: 325264 - 325389 (-)
Gene ID: ShaoY_2019_ERR3405869_bin.2_k141_2161_291
Type: TC
Location: 325529 - 328891 (-)
Gene ID: ShaoY_2019_ERR3405869_bin.2_k141_2161_292
Type: TC
Location: 328899 - 329600 (-)
Gene ID: ShaoY_2019_ERR3405869_bin.2_k141_2161_293
Type: CAZyme
Location: 329788 - 330936 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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