Cluster: ShaoY_2019_ERR3405869_bin.2_CGC28
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 3
- Substrate:
- Genome ID: ShaoY_2019_ERR3405869_bin.2
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ShaoY_2019_ERR3405869_bin.2_k141_7961 | ShaoY_2019_ERR3405869_bin.2_k141_7961_117 | 131226 | 133307 | + | 3.A.7.7.1 |
| CAZyme | ShaoY_2019_ERR3405869_bin.2_k141_7961 | ShaoY_2019_ERR3405869_bin.2_k141_7961_118 | 133909 | 136155 | + | GT2 |
| CAZyme | ShaoY_2019_ERR3405869_bin.2_k141_7961 | ShaoY_2019_ERR3405869_bin.2_k141_7961_119 | 136159 | 137721 | + | CBM5 | CBM5 | GH18 |
| TC | ShaoY_2019_ERR3405869_bin.2_k141_7961 | ShaoY_2019_ERR3405869_bin.2_k141_7961_120 | 137914 | 139188 | - | 2.A.40.1.2 |
| TF | ShaoY_2019_ERR3405869_bin.2_k141_7961 | ShaoY_2019_ERR3405869_bin.2_k141_7961_121 | 139532 | 140290 | - | HTH_6 |
| CAZyme | ShaoY_2019_ERR3405869_bin.2_k141_7961 | ShaoY_2019_ERR3405869_bin.2_k141_7961_122 | 140444 | 141778 | + | GH4 |
| TC | ShaoY_2019_ERR3405869_bin.2_k141_7961 | ShaoY_2019_ERR3405869_bin.2_k141_7961_123 | 141798 | 143360 | + | 4.A.1.1.8 |
| TC | ShaoY_2019_ERR3405869_bin.2_k141_7961 | ShaoY_2019_ERR3405869_bin.2_k141_7961_124 | 143416 | 144285 | + | 2.A.7.5.5 |
| TF | ShaoY_2019_ERR3405869_bin.2_k141_7961 | ShaoY_2019_ERR3405869_bin.2_k141_7961_125 | 144330 | 145163 | - | HTH_AraC | HTH_AraC |
| TC | ShaoY_2019_ERR3405869_bin.2_k141_7961 | ShaoY_2019_ERR3405869_bin.2_k141_7961_126 | 145386 | 147134 | + | 3.A.1.106.3 |
| TC | ShaoY_2019_ERR3405869_bin.2_k141_7961 | ShaoY_2019_ERR3405869_bin.2_k141_7961_127 | 147124 | 148905 | + | 3.A.1.106.3 |
| TC | ShaoY_2019_ERR3405869_bin.2_k141_7961 | ShaoY_2019_ERR3405869_bin.2_k141_7961_128 | 148958 | 150949 | - | 2.A.72.1.3 |
Gene ID: ShaoY_2019_ERR3405869_bin.2_k141_7961_117
Type: TC
Location: 131226 - 133307 (+)
Type: TC
Location: 131226 - 133307 (+)
Gene ID: ShaoY_2019_ERR3405869_bin.2_k141_7961_118
Type: CAZyme
Location: 133909 - 136155 (+)
Type: CAZyme
Location: 133909 - 136155 (+)
Gene ID: ShaoY_2019_ERR3405869_bin.2_k141_7961_119
Type: CAZyme
Location: 136159 - 137721 (+)
Type: CAZyme
Location: 136159 - 137721 (+)
Gene ID: ShaoY_2019_ERR3405869_bin.2_k141_7961_120
Type: TC
Location: 137914 - 139188 (-)
Type: TC
Location: 137914 - 139188 (-)
Gene ID: ShaoY_2019_ERR3405869_bin.2_k141_7961_121
Type: TF
Location: 139532 - 140290 (-)
Type: TF
Location: 139532 - 140290 (-)
Gene ID: ShaoY_2019_ERR3405869_bin.2_k141_7961_122
Type: CAZyme
Location: 140444 - 141778 (+)
Type: CAZyme
Location: 140444 - 141778 (+)
Gene ID: ShaoY_2019_ERR3405869_bin.2_k141_7961_123
Type: TC
Location: 141798 - 143360 (+)
Type: TC
Location: 141798 - 143360 (+)
Gene ID: ShaoY_2019_ERR3405869_bin.2_k141_7961_124
Type: TC
Location: 143416 - 144285 (+)
Type: TC
Location: 143416 - 144285 (+)
Gene ID: ShaoY_2019_ERR3405869_bin.2_k141_7961_125
Type: TF
Location: 144330 - 145163 (-)
Type: TF
Location: 144330 - 145163 (-)
Gene ID: ShaoY_2019_ERR3405869_bin.2_k141_7961_126
Type: TC
Location: 145386 - 147134 (+)
Type: TC
Location: 145386 - 147134 (+)
Gene ID: ShaoY_2019_ERR3405869_bin.2_k141_7961_127
Type: TC
Location: 147124 - 148905 (+)
Type: TC
Location: 147124 - 148905 (+)
Gene ID: ShaoY_2019_ERR3405869_bin.2_k141_7961_128
Type: TC
Location: 148958 - 150949 (-)
Type: TC
Location: 148958 - 150949 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Enterococcaceae
Genus
Enterococcus_C
Species
Enterococcus_C myersii
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.