Cluster: ShaoY_2019_ERR3405869_bin.2_CGC22
🧬 Cluster Details
- Gene Count: 14
- CAZyme Count: 5
- Substrate:
- Genome ID: ShaoY_2019_ERR3405869_bin.2
- CGC Family ID: CGCFAM_00585
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | ShaoY_2019_ERR3405869_bin.2_k141_7665 | ShaoY_2019_ERR3405869_bin.2_k141_7665_40 | 51524 | 52858 | - | GH20 |
| CAZyme | ShaoY_2019_ERR3405869_bin.2_k141_7665 | ShaoY_2019_ERR3405869_bin.2_k141_7665_41 | 52994 | 55663 | - | GH38 |
| CAZyme | ShaoY_2019_ERR3405869_bin.2_k141_7665 | ShaoY_2019_ERR3405869_bin.2_k141_7665_42 | 55727 | 57016 | - | GH125 |
| TF | ShaoY_2019_ERR3405869_bin.2_k141_7665 | ShaoY_2019_ERR3405869_bin.2_k141_7665_43 | 57180 | 58214 | + | GntR |
| CAZyme | ShaoY_2019_ERR3405869_bin.2_k141_7665 | ShaoY_2019_ERR3405869_bin.2_k141_7665_44 | 58211 | 60355 | + | GH92 |
| TF | ShaoY_2019_ERR3405869_bin.2_k141_7665 | ShaoY_2019_ERR3405869_bin.2_k141_7665_45 | 60976 | 61836 | + | HTH_3 |
| pfam | ShaoY_2019_ERR3405869_bin.2_k141_7665 | ShaoY_2019_ERR3405869_bin.2_k141_7665_46 | 61882 | 62739 | - | ROK |
| CAZyme | ShaoY_2019_ERR3405869_bin.2_k141_7665 | ShaoY_2019_ERR3405869_bin.2_k141_7665_47 | 63095 | 64489 | - | GH1 |
| TF | ShaoY_2019_ERR3405869_bin.2_k141_7665 | ShaoY_2019_ERR3405869_bin.2_k141_7665_48 | 64562 | 66046 | - | HTH_AraC |
| TC | ShaoY_2019_ERR3405869_bin.2_k141_7665 | ShaoY_2019_ERR3405869_bin.2_k141_7665_49 | 66039 | 67814 | - | 8.A.59.2.1 |
| pfam | ShaoY_2019_ERR3405869_bin.2_k141_7665 | ShaoY_2019_ERR3405869_bin.2_k141_7665_50 | 67759 | 68373 | - | DUF624 |
| STP | ShaoY_2019_ERR3405869_bin.2_k141_7665 | ShaoY_2019_ERR3405869_bin.2_k141_7665_51 | 68577 | 70046 | - | SBP_bac_1 |
| TC | ShaoY_2019_ERR3405869_bin.2_k141_7665 | ShaoY_2019_ERR3405869_bin.2_k141_7665_52 | 70065 | 70991 | - | 3.A.1.1.29 |
| TC | ShaoY_2019_ERR3405869_bin.2_k141_7665 | ShaoY_2019_ERR3405869_bin.2_k141_7665_53 | 71005 | 71949 | - | 3.A.1.1.10 |
Gene ID: ShaoY_2019_ERR3405869_bin.2_k141_7665_40
Type: CAZyme
Location: 51524 - 52858 (-)
Type: CAZyme
Location: 51524 - 52858 (-)
Gene ID: ShaoY_2019_ERR3405869_bin.2_k141_7665_41
Type: CAZyme
Location: 52994 - 55663 (-)
Type: CAZyme
Location: 52994 - 55663 (-)
Gene ID: ShaoY_2019_ERR3405869_bin.2_k141_7665_42
Type: CAZyme
Location: 55727 - 57016 (-)
Type: CAZyme
Location: 55727 - 57016 (-)
Gene ID: ShaoY_2019_ERR3405869_bin.2_k141_7665_43
Type: TF
Location: 57180 - 58214 (+)
Type: TF
Location: 57180 - 58214 (+)
Gene ID: ShaoY_2019_ERR3405869_bin.2_k141_7665_44
Type: CAZyme
Location: 58211 - 60355 (+)
Type: CAZyme
Location: 58211 - 60355 (+)
Gene ID: ShaoY_2019_ERR3405869_bin.2_k141_7665_45
Type: TF
Location: 60976 - 61836 (+)
Type: TF
Location: 60976 - 61836 (+)
Gene ID: ShaoY_2019_ERR3405869_bin.2_k141_7665_46
Type: pfam
Location: 61882 - 62739 (-)
Type: pfam
Location: 61882 - 62739 (-)
Gene ID: ShaoY_2019_ERR3405869_bin.2_k141_7665_47
Type: CAZyme
Location: 63095 - 64489 (-)
Type: CAZyme
Location: 63095 - 64489 (-)
Gene ID: ShaoY_2019_ERR3405869_bin.2_k141_7665_48
Type: TF
Location: 64562 - 66046 (-)
Type: TF
Location: 64562 - 66046 (-)
Gene ID: ShaoY_2019_ERR3405869_bin.2_k141_7665_49
Type: TC
Location: 66039 - 67814 (-)
Type: TC
Location: 66039 - 67814 (-)
Gene ID: ShaoY_2019_ERR3405869_bin.2_k141_7665_50
Type: pfam
Location: 67759 - 68373 (-)
Type: pfam
Location: 67759 - 68373 (-)
Gene ID: ShaoY_2019_ERR3405869_bin.2_k141_7665_51
Type: STP
Location: 68577 - 70046 (-)
Type: STP
Location: 68577 - 70046 (-)
Gene ID: ShaoY_2019_ERR3405869_bin.2_k141_7665_52
Type: TC
Location: 70065 - 70991 (-)
Type: TC
Location: 70065 - 70991 (-)
Gene ID: ShaoY_2019_ERR3405869_bin.2_k141_7665_53
Type: TC
Location: 71005 - 71949 (-)
Type: TC
Location: 71005 - 71949 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Enterococcaceae
Genus
Enterococcus_C
Species
Enterococcus_C myersii
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.