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Cluster: ShaoY_2019_ERR3405869_bin.2_CGC15

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC ShaoY_2019_ERR3405869_bin.2_k141_5827 ShaoY_2019_ERR3405869_bin.2_k141_5827_99 108844 110493 + 3.A.1.5.19
peptidase ShaoY_2019_ERR3405869_bin.2_k141_5827 ShaoY_2019_ERR3405869_bin.2_k141_5827_100 110505 111728 + M20.UPB
TC ShaoY_2019_ERR3405869_bin.2_k141_5827 ShaoY_2019_ERR3405869_bin.2_k141_5827_101 112055 113728 + 3.A.1.5.19
pfam ShaoY_2019_ERR3405869_bin.2_k141_5827 ShaoY_2019_ERR3405869_bin.2_k141_5827_102 113849 114190 - DUF3899
TC ShaoY_2019_ERR3405869_bin.2_k141_5827 ShaoY_2019_ERR3405869_bin.2_k141_5827_103 114837 115778 + 3.A.1.5.19
TC ShaoY_2019_ERR3405869_bin.2_k141_5827 ShaoY_2019_ERR3405869_bin.2_k141_5827_104 115778 116821 + 3.A.1.5.19
TC ShaoY_2019_ERR3405869_bin.2_k141_5827 ShaoY_2019_ERR3405869_bin.2_k141_5827_105 116821 117867 + 3.A.1.5.25
TC ShaoY_2019_ERR3405869_bin.2_k141_5827 ShaoY_2019_ERR3405869_bin.2_k141_5827_106 117880 118833 + 3.A.1.5.19
pfam ShaoY_2019_ERR3405869_bin.2_k141_5827 ShaoY_2019_ERR3405869_bin.2_k141_5827_107 119321 120406 + HTH_OrfB_IS605
pfam ShaoY_2019_ERR3405869_bin.2_k141_5827 ShaoY_2019_ERR3405869_bin.2_k141_5827_108 120878 121123 + Transgly_assoc
CAZyme ShaoY_2019_ERR3405869_bin.2_k141_5827 ShaoY_2019_ERR3405869_bin.2_k141_5827_109 121428 123047 - GH13_31
TC ShaoY_2019_ERR3405869_bin.2_k141_5827 ShaoY_2019_ERR3405869_bin.2_k141_5827_110 123324 124574 + 3.A.1.1.3
TC ShaoY_2019_ERR3405869_bin.2_k141_5827 ShaoY_2019_ERR3405869_bin.2_k141_5827_111 124726 125619 + 3.A.1.1.20
TC ShaoY_2019_ERR3405869_bin.2_k141_5827 ShaoY_2019_ERR3405869_bin.2_k141_5827_112 125635 126465 + 3.A.1.1.34
CAZyme ShaoY_2019_ERR3405869_bin.2_k141_5827 ShaoY_2019_ERR3405869_bin.2_k141_5827_113 126497 128647 + GH3
CAZyme ShaoY_2019_ERR3405869_bin.2_k141_5827 ShaoY_2019_ERR3405869_bin.2_k141_5827_114 128660 131941 + GH94
Gene ID: ShaoY_2019_ERR3405869_bin.2_k141_5827_99
Type: TC
Location: 108844 - 110493 (+)
Gene ID: ShaoY_2019_ERR3405869_bin.2_k141_5827_100
Type: peptidase
Location: 110505 - 111728 (+)
Gene ID: ShaoY_2019_ERR3405869_bin.2_k141_5827_101
Type: TC
Location: 112055 - 113728 (+)
Gene ID: ShaoY_2019_ERR3405869_bin.2_k141_5827_102
Type: pfam
Location: 113849 - 114190 (-)
Gene ID: ShaoY_2019_ERR3405869_bin.2_k141_5827_103
Type: TC
Location: 114837 - 115778 (+)
Gene ID: ShaoY_2019_ERR3405869_bin.2_k141_5827_104
Type: TC
Location: 115778 - 116821 (+)
Gene ID: ShaoY_2019_ERR3405869_bin.2_k141_5827_105
Type: TC
Location: 116821 - 117867 (+)
Gene ID: ShaoY_2019_ERR3405869_bin.2_k141_5827_106
Type: TC
Location: 117880 - 118833 (+)
Gene ID: ShaoY_2019_ERR3405869_bin.2_k141_5827_107
Type: pfam
Location: 119321 - 120406 (+)
Gene ID: ShaoY_2019_ERR3405869_bin.2_k141_5827_108
Type: pfam
Location: 120878 - 121123 (+)
Gene ID: ShaoY_2019_ERR3405869_bin.2_k141_5827_109
Type: CAZyme
Location: 121428 - 123047 (-)
Gene ID: ShaoY_2019_ERR3405869_bin.2_k141_5827_110
Type: TC
Location: 123324 - 124574 (+)
Gene ID: ShaoY_2019_ERR3405869_bin.2_k141_5827_111
Type: TC
Location: 124726 - 125619 (+)
Gene ID: ShaoY_2019_ERR3405869_bin.2_k141_5827_112
Type: TC
Location: 125635 - 126465 (+)
Gene ID: ShaoY_2019_ERR3405869_bin.2_k141_5827_113
Type: CAZyme
Location: 126497 - 128647 (+)
Gene ID: ShaoY_2019_ERR3405869_bin.2_k141_5827_114
Type: CAZyme
Location: 128660 - 131941 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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