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Cluster: ShaoY_2019_ERR3405869_bin.2_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC ShaoY_2019_ERR3405869_bin.2_k141_2161 ShaoY_2019_ERR3405869_bin.2_k141_2161_127 136559 138085 + 2.A.49.5.5
NULL(UNKNOWN) ShaoY_2019_ERR3405869_bin.2_k141_2161 ShaoY_2019_ERR3405869_bin.2_k141_2161_128 138142 140445 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme ShaoY_2019_ERR3405869_bin.2_k141_2161 ShaoY_2019_ERR3405869_bin.2_k141_2161_129 140463 141929 - GH13_5
TF ShaoY_2019_ERR3405869_bin.2_k141_2161 ShaoY_2019_ERR3405869_bin.2_k141_2161_130 142115 142870 + HTH_DeoR
STP ShaoY_2019_ERR3405869_bin.2_k141_2161 ShaoY_2019_ERR3405869_bin.2_k141_2161_131 142867 143784 + PfkB
TC ShaoY_2019_ERR3405869_bin.2_k141_2161 ShaoY_2019_ERR3405869_bin.2_k141_2161_132 143831 145750 + 4.A.2.1.20
Gene ID: ShaoY_2019_ERR3405869_bin.2_k141_2161_127
Type: TC
Location: 136559 - 138085 (+)
Gene ID: ShaoY_2019_ERR3405869_bin.2_k141_2161_128
Type:
Location: 138142 - 140445 (-)
Gene ID: ShaoY_2019_ERR3405869_bin.2_k141_2161_129
Type: CAZyme
Location: 140463 - 141929 (-)
Gene ID: ShaoY_2019_ERR3405869_bin.2_k141_2161_130
Type: TF
Location: 142115 - 142870 (+)
Gene ID: ShaoY_2019_ERR3405869_bin.2_k141_2161_131
Type: STP
Location: 142867 - 143784 (+)
Gene ID: ShaoY_2019_ERR3405869_bin.2_k141_2161_132
Type: TC
Location: 143831 - 145750 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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