Cluster: ShaoY_2019_ERR3405861_bin.6_CGC7
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: ShaoY_2019_ERR3405861_bin.6
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | ShaoY_2019_ERR3405861_bin.6_k141_9252 | ShaoY_2019_ERR3405861_bin.6_k141_9252_7 | 7998 | 9140 | - | GT4 |
| pfam | ShaoY_2019_ERR3405861_bin.6_k141_9252 | ShaoY_2019_ERR3405861_bin.6_k141_9252_8 | 9274 | 10119 | + | LicD |
| pfam | ShaoY_2019_ERR3405861_bin.6_k141_9252 | ShaoY_2019_ERR3405861_bin.6_k141_9252_9 | 10439 | 11371 | + | NadA |
| TC | ShaoY_2019_ERR3405861_bin.6_k141_9252 | ShaoY_2019_ERR3405861_bin.6_k141_9252_10 | 11368 | 12477 | + | 3.D.10.1.3 |
Gene ID: ShaoY_2019_ERR3405861_bin.6_k141_9252_7
Type: CAZyme
Location: 7998 - 9140 (-)
Type: CAZyme
Location: 7998 - 9140 (-)
Gene ID: ShaoY_2019_ERR3405861_bin.6_k141_9252_8
Type: pfam
Location: 9274 - 10119 (+)
Type: pfam
Location: 9274 - 10119 (+)
Gene ID: ShaoY_2019_ERR3405861_bin.6_k141_9252_9
Type: pfam
Location: 10439 - 11371 (+)
Type: pfam
Location: 10439 - 11371 (+)
Gene ID: ShaoY_2019_ERR3405861_bin.6_k141_9252_10
Type: TC
Location: 11368 - 12477 (+)
Type: TC
Location: 11368 - 12477 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Atopobiaceae
Genus
Granulimonas
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.