Cluster: ShaoY_2019_ERR3405861_bin.6_CGC5
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: ShaoY_2019_ERR3405861_bin.6
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ShaoY_2019_ERR3405861_bin.6_k141_5441 | ShaoY_2019_ERR3405861_bin.6_k141_5441_3 | 1856 | 2875 | + | 9.B.146.1.3 |
| pfam | ShaoY_2019_ERR3405861_bin.6_k141_5441 | ShaoY_2019_ERR3405861_bin.6_k141_5441_4 | 2889 | 4310 | + | Mur_ligase_C | Mur_ligase_M |
| TC | ShaoY_2019_ERR3405861_bin.6_k141_5441 | ShaoY_2019_ERR3405861_bin.6_k141_5441_5 | 4307 | 5869 | + | 2.A.103.1.2 |
| CAZyme | ShaoY_2019_ERR3405861_bin.6_k141_5441 | ShaoY_2019_ERR3405861_bin.6_k141_5441_6 | 5873 | 7003 | + | GT28 |
Gene ID: ShaoY_2019_ERR3405861_bin.6_k141_5441_3
Type: TC
Location: 1856 - 2875 (+)
Type: TC
Location: 1856 - 2875 (+)
Gene ID: ShaoY_2019_ERR3405861_bin.6_k141_5441_4
Type: pfam
Location: 2889 - 4310 (+)
Type: pfam
Location: 2889 - 4310 (+)
Gene ID: ShaoY_2019_ERR3405861_bin.6_k141_5441_5
Type: TC
Location: 4307 - 5869 (+)
Type: TC
Location: 4307 - 5869 (+)
Gene ID: ShaoY_2019_ERR3405861_bin.6_k141_5441_6
Type: CAZyme
Location: 5873 - 7003 (+)
Type: CAZyme
Location: 5873 - 7003 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Atopobiaceae
Genus
Granulimonas
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.