Cluster: ShaoY_2019_ERR3405861_bin.6_CGC4
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: ShaoY_2019_ERR3405861_bin.6
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ShaoY_2019_ERR3405861_bin.6_k141_4826 | ShaoY_2019_ERR3405861_bin.6_k141_4826_8 | 7881 | 8117 | + | 9.A.8.1.6 |
| TC | ShaoY_2019_ERR3405861_bin.6_k141_4826 | ShaoY_2019_ERR3405861_bin.6_k141_4826_9 | 8219 | 10852 | + | 9.A.8.1.6 |
| pfam | ShaoY_2019_ERR3405861_bin.6_k141_4826 | ShaoY_2019_ERR3405861_bin.6_k141_4826_10 | 11015 | 11344 | - | Cupin_2 |
| NULL(UNKNOWN) | ShaoY_2019_ERR3405861_bin.6_k141_4826 | ShaoY_2019_ERR3405861_bin.6_k141_4826_11 | 11526 | 11786 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | ShaoY_2019_ERR3405861_bin.6_k141_4826 | ShaoY_2019_ERR3405861_bin.6_k141_4826_12 | 11934 | 13388 | + | GH13_5 |
Gene ID: ShaoY_2019_ERR3405861_bin.6_k141_4826_8
Type: TC
Location: 7881 - 8117 (+)
Type: TC
Location: 7881 - 8117 (+)
Gene ID: ShaoY_2019_ERR3405861_bin.6_k141_4826_9
Type: TC
Location: 8219 - 10852 (+)
Type: TC
Location: 8219 - 10852 (+)
Gene ID: ShaoY_2019_ERR3405861_bin.6_k141_4826_10
Type: pfam
Location: 11015 - 11344 (-)
Type: pfam
Location: 11015 - 11344 (-)
Gene ID: ShaoY_2019_ERR3405861_bin.6_k141_4826_11
Type:
Location: 11526 - 11786 (+)
Type:
Location: 11526 - 11786 (+)
Gene ID: ShaoY_2019_ERR3405861_bin.6_k141_4826_12
Type: CAZyme
Location: 11934 - 13388 (+)
Type: CAZyme
Location: 11934 - 13388 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Atopobiaceae
Genus
Granulimonas
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.