Cluster: ShaoY_2019_ERR3405861_bin.6_CGC15
🧬 Cluster Details
- Gene Count: 9
- CAZyme Count: 1
- Substrate:
- Genome ID: ShaoY_2019_ERR3405861_bin.6
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ShaoY_2019_ERR3405861_bin.6_k141_23360 | ShaoY_2019_ERR3405861_bin.6_k141_23360_14 | 13792 | 15387 | + | 4.A.1.1.8 |
| CAZyme | ShaoY_2019_ERR3405861_bin.6_k141_23360 | ShaoY_2019_ERR3405861_bin.6_k141_23360_15 | 15475 | 16818 | + | GH4 |
| NULL(UNKNOWN) | ShaoY_2019_ERR3405861_bin.6_k141_23360 | ShaoY_2019_ERR3405861_bin.6_k141_23360_16 | 16933 | 17538 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | ShaoY_2019_ERR3405861_bin.6_k141_23360 | ShaoY_2019_ERR3405861_bin.6_k141_23360_17 | 17598 | 18101 | + | 4.A.1.1.1 |
| pfam | ShaoY_2019_ERR3405861_bin.6_k141_23360 | ShaoY_2019_ERR3405861_bin.6_k141_23360_18 | 19014 | 19289 | - | DUF6485 |
| TC | ShaoY_2019_ERR3405861_bin.6_k141_23360 | ShaoY_2019_ERR3405861_bin.6_k141_23360_19 | 19432 | 21177 | - | 1.I.1.1.3 |
| pfam | ShaoY_2019_ERR3405861_bin.6_k141_23360 | ShaoY_2019_ERR3405861_bin.6_k141_23360_20 | 21564 | 22811 | - | ABC2_membrane_3 |
| pfam | ShaoY_2019_ERR3405861_bin.6_k141_23360 | ShaoY_2019_ERR3405861_bin.6_k141_23360_21 | 22798 | 23982 | - | ABC2_membrane_3 |
| TC | ShaoY_2019_ERR3405861_bin.6_k141_23360 | ShaoY_2019_ERR3405861_bin.6_k141_23360_22 | 23992 | 24948 | - | 3.A.1.105.9 |
Gene ID: ShaoY_2019_ERR3405861_bin.6_k141_23360_14
Type: TC
Location: 13792 - 15387 (+)
Type: TC
Location: 13792 - 15387 (+)
Gene ID: ShaoY_2019_ERR3405861_bin.6_k141_23360_15
Type: CAZyme
Location: 15475 - 16818 (+)
Type: CAZyme
Location: 15475 - 16818 (+)
Gene ID: ShaoY_2019_ERR3405861_bin.6_k141_23360_16
Type:
Location: 16933 - 17538 (+)
Type:
Location: 16933 - 17538 (+)
Gene ID: ShaoY_2019_ERR3405861_bin.6_k141_23360_17
Type: TC
Location: 17598 - 18101 (+)
Type: TC
Location: 17598 - 18101 (+)
Gene ID: ShaoY_2019_ERR3405861_bin.6_k141_23360_18
Type: pfam
Location: 19014 - 19289 (-)
Type: pfam
Location: 19014 - 19289 (-)
Gene ID: ShaoY_2019_ERR3405861_bin.6_k141_23360_19
Type: TC
Location: 19432 - 21177 (-)
Type: TC
Location: 19432 - 21177 (-)
Gene ID: ShaoY_2019_ERR3405861_bin.6_k141_23360_20
Type: pfam
Location: 21564 - 22811 (-)
Type: pfam
Location: 21564 - 22811 (-)
Gene ID: ShaoY_2019_ERR3405861_bin.6_k141_23360_21
Type: pfam
Location: 22798 - 23982 (-)
Type: pfam
Location: 22798 - 23982 (-)
Gene ID: ShaoY_2019_ERR3405861_bin.6_k141_23360_22
Type: TC
Location: 23992 - 24948 (-)
Type: TC
Location: 23992 - 24948 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Atopobiaceae
Genus
Granulimonas
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.