Cluster: ShaoY_2019_ERR3405861_bin.6_CGC13
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: ShaoY_2019_ERR3405861_bin.6
- CGC Family ID: CGCFAM_10538
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ShaoY_2019_ERR3405861_bin.6_k141_16787 | ShaoY_2019_ERR3405861_bin.6_k141_16787_22 | 26132 | 26839 | - | 3.A.1.125.2 |
| pfam | ShaoY_2019_ERR3405861_bin.6_k141_16787 | ShaoY_2019_ERR3405861_bin.6_k141_16787_23 | 26919 | 27230 | + | Acylphosphatase |
| NULL(UNKNOWN) | ShaoY_2019_ERR3405861_bin.6_k141_16787 | ShaoY_2019_ERR3405861_bin.6_k141_16787_24 | 27243 | 27992 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | ShaoY_2019_ERR3405861_bin.6_k141_16787 | ShaoY_2019_ERR3405861_bin.6_k141_16787_25 | 28180 | 29205 | - | CE9 |
| pfam | ShaoY_2019_ERR3405861_bin.6_k141_16787 | ShaoY_2019_ERR3405861_bin.6_k141_16787_26 | 29411 | 29872 | - | Flavodoxin_1 |
| TC | ShaoY_2019_ERR3405861_bin.6_k141_16787 | ShaoY_2019_ERR3405861_bin.6_k141_16787_27 | 30338 | 31603 | + | 1.A.11.1.4 |
Gene ID: ShaoY_2019_ERR3405861_bin.6_k141_16787_22
Type: TC
Location: 26132 - 26839 (-)
Type: TC
Location: 26132 - 26839 (-)
Gene ID: ShaoY_2019_ERR3405861_bin.6_k141_16787_23
Type: pfam
Location: 26919 - 27230 (+)
Type: pfam
Location: 26919 - 27230 (+)
Gene ID: ShaoY_2019_ERR3405861_bin.6_k141_16787_24
Type:
Location: 27243 - 27992 (-)
Type:
Location: 27243 - 27992 (-)
Gene ID: ShaoY_2019_ERR3405861_bin.6_k141_16787_25
Type: CAZyme
Location: 28180 - 29205 (-)
Type: CAZyme
Location: 28180 - 29205 (-)
Gene ID: ShaoY_2019_ERR3405861_bin.6_k141_16787_26
Type: pfam
Location: 29411 - 29872 (-)
Type: pfam
Location: 29411 - 29872 (-)
Gene ID: ShaoY_2019_ERR3405861_bin.6_k141_16787_27
Type: TC
Location: 30338 - 31603 (+)
Type: TC
Location: 30338 - 31603 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Atopobiaceae
Genus
Granulimonas
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.