Cluster: ShaoY_2019_ERR3405861_bin.6_CGC12
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: ShaoY_2019_ERR3405861_bin.6
- CGC Family ID: CGCFAM_01032
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | ShaoY_2019_ERR3405861_bin.6_k141_16047 | ShaoY_2019_ERR3405861_bin.6_k141_16047_7 | 5844 | 7550 | + | GT2 |
| CAZyme | ShaoY_2019_ERR3405861_bin.6_k141_16047 | ShaoY_2019_ERR3405861_bin.6_k141_16047_8 | 7693 | 9549 | + | GT2 |
| TC | ShaoY_2019_ERR3405861_bin.6_k141_16047 | ShaoY_2019_ERR3405861_bin.6_k141_16047_9 | 9671 | 10432 | - | 3.A.1.17.13 |
| TC | ShaoY_2019_ERR3405861_bin.6_k141_16047 | ShaoY_2019_ERR3405861_bin.6_k141_16047_10 | 10425 | 11429 | - | 3.A.1.17.8 |
| TC | ShaoY_2019_ERR3405861_bin.6_k141_16047 | ShaoY_2019_ERR3405861_bin.6_k141_16047_11 | 11426 | 12256 | - | 3.A.1.17.13 |
Gene ID: ShaoY_2019_ERR3405861_bin.6_k141_16047_7
Type: CAZyme
Location: 5844 - 7550 (+)
Type: CAZyme
Location: 5844 - 7550 (+)
Gene ID: ShaoY_2019_ERR3405861_bin.6_k141_16047_8
Type: CAZyme
Location: 7693 - 9549 (+)
Type: CAZyme
Location: 7693 - 9549 (+)
Gene ID: ShaoY_2019_ERR3405861_bin.6_k141_16047_9
Type: TC
Location: 9671 - 10432 (-)
Type: TC
Location: 9671 - 10432 (-)
Gene ID: ShaoY_2019_ERR3405861_bin.6_k141_16047_10
Type: TC
Location: 10425 - 11429 (-)
Type: TC
Location: 10425 - 11429 (-)
Gene ID: ShaoY_2019_ERR3405861_bin.6_k141_16047_11
Type: TC
Location: 11426 - 12256 (-)
Type: TC
Location: 11426 - 12256 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Atopobiaceae
Genus
Granulimonas
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.