Cluster: ShaoY_2019_ERR3405857_bin.6_CGC25
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 2
- Substrate:
- Genome ID: ShaoY_2019_ERR3405857_bin.6
- CGC Family ID: CGCFAM_08641
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ShaoY_2019_ERR3405857_bin.6_k141_36390 | ShaoY_2019_ERR3405857_bin.6_k141_36390_15 | 18154 | 19254 | - | 3.A.1.5.34 |
| TC | ShaoY_2019_ERR3405857_bin.6_k141_36390 | ShaoY_2019_ERR3405857_bin.6_k141_36390_16 | 19256 | 20392 | - | 3.A.1.5.20 |
| TC | ShaoY_2019_ERR3405857_bin.6_k141_36390 | ShaoY_2019_ERR3405857_bin.6_k141_36390_17 | 20398 | 21321 | - | 3.A.1.5.38 |
| TC | ShaoY_2019_ERR3405857_bin.6_k141_36390 | ShaoY_2019_ERR3405857_bin.6_k141_36390_18 | 21327 | 22343 | - | 3.A.1.5.39 |
| TC | ShaoY_2019_ERR3405857_bin.6_k141_36390 | ShaoY_2019_ERR3405857_bin.6_k141_36390_19 | 22463 | 24076 | - | 3.A.1.5.27 |
| pfam | ShaoY_2019_ERR3405857_bin.6_k141_36390 | ShaoY_2019_ERR3405857_bin.6_k141_36390_20 | 24921 | 25832 | + | Patatin | DUF6363 |
| CAZyme | ShaoY_2019_ERR3405857_bin.6_k141_36390 | ShaoY_2019_ERR3405857_bin.6_k141_36390_21 | 25839 | 28670 | + | GH31_18 |
| CAZyme | ShaoY_2019_ERR3405857_bin.6_k141_36390 | ShaoY_2019_ERR3405857_bin.6_k141_36390_22 | 29000 | 35962 | + | CBM32 | GH31_18 |
Gene ID: ShaoY_2019_ERR3405857_bin.6_k141_36390_15
Type: TC
Location: 18154 - 19254 (-)
Type: TC
Location: 18154 - 19254 (-)
Gene ID: ShaoY_2019_ERR3405857_bin.6_k141_36390_16
Type: TC
Location: 19256 - 20392 (-)
Type: TC
Location: 19256 - 20392 (-)
Gene ID: ShaoY_2019_ERR3405857_bin.6_k141_36390_17
Type: TC
Location: 20398 - 21321 (-)
Type: TC
Location: 20398 - 21321 (-)
Gene ID: ShaoY_2019_ERR3405857_bin.6_k141_36390_18
Type: TC
Location: 21327 - 22343 (-)
Type: TC
Location: 21327 - 22343 (-)
Gene ID: ShaoY_2019_ERR3405857_bin.6_k141_36390_19
Type: TC
Location: 22463 - 24076 (-)
Type: TC
Location: 22463 - 24076 (-)
Gene ID: ShaoY_2019_ERR3405857_bin.6_k141_36390_20
Type: pfam
Location: 24921 - 25832 (+)
Type: pfam
Location: 24921 - 25832 (+)
Gene ID: ShaoY_2019_ERR3405857_bin.6_k141_36390_21
Type: CAZyme
Location: 25839 - 28670 (+)
Type: CAZyme
Location: 25839 - 28670 (+)
Gene ID: ShaoY_2019_ERR3405857_bin.6_k141_36390_22
Type: CAZyme
Location: 29000 - 35962 (+)
Type: CAZyme
Location: 29000 - 35962 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Atopobiaceae
Genus
Thermophilibacter
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.