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Cluster: ShaoY_2019_ERR3405857_bin.6_CGC18

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC ShaoY_2019_ERR3405857_bin.6_k141_32218 ShaoY_2019_ERR3405857_bin.6_k141_32218_163 172917 175580 + 3.A.3.5.15
STP ShaoY_2019_ERR3405857_bin.6_k141_32218 ShaoY_2019_ERR3405857_bin.6_k141_32218_164 175690 176331 - TetR_N
CAZyme ShaoY_2019_ERR3405857_bin.6_k141_32218 ShaoY_2019_ERR3405857_bin.6_k141_32218_165 176948 179203 + GH36
TF ShaoY_2019_ERR3405857_bin.6_k141_32218 ShaoY_2019_ERR3405857_bin.6_k141_32218_166 179464 180342 - HTH_1
pfam ShaoY_2019_ERR3405857_bin.6_k141_32218 ShaoY_2019_ERR3405857_bin.6_k141_32218_167 180453 180830 + Cyclophil_like2
TC ShaoY_2019_ERR3405857_bin.6_k141_32218 ShaoY_2019_ERR3405857_bin.6_k141_32218_168 180840 181856 + 8.A.5.1.6
Gene ID: ShaoY_2019_ERR3405857_bin.6_k141_32218_163
Type: TC
Location: 172917 - 175580 (+)
Gene ID: ShaoY_2019_ERR3405857_bin.6_k141_32218_164
Type: STP
Location: 175690 - 176331 (-)
Gene ID: ShaoY_2019_ERR3405857_bin.6_k141_32218_165
Type: CAZyme
Location: 176948 - 179203 (+)
Gene ID: ShaoY_2019_ERR3405857_bin.6_k141_32218_166
Type: TF
Location: 179464 - 180342 (-)
Gene ID: ShaoY_2019_ERR3405857_bin.6_k141_32218_167
Type: pfam
Location: 180453 - 180830 (+)
Gene ID: ShaoY_2019_ERR3405857_bin.6_k141_32218_168
Type: TC
Location: 180840 - 181856 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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