Cluster: ShaoY_2019_ERR3405857_bin.6_CGC11
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 3
- Substrate:
- Genome ID: ShaoY_2019_ERR3405857_bin.6
- CGC Family ID: CGCFAM_01111
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | ShaoY_2019_ERR3405857_bin.6_k141_9519 | ShaoY_2019_ERR3405857_bin.6_k141_9519_162 | 192652 | 193644 | - | GT2 |
| CAZyme | ShaoY_2019_ERR3405857_bin.6_k141_9519 | ShaoY_2019_ERR3405857_bin.6_k141_9519_163 | 193727 | 194851 | + | GT2 |
| CAZyme | ShaoY_2019_ERR3405857_bin.6_k141_9519 | ShaoY_2019_ERR3405857_bin.6_k141_9519_164 | 194936 | 196003 | - | GT2 |
| NULL(UNKNOWN) | ShaoY_2019_ERR3405857_bin.6_k141_9519 | ShaoY_2019_ERR3405857_bin.6_k141_9519_165 | 196165 | 196947 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | ShaoY_2019_ERR3405857_bin.6_k141_9519 | ShaoY_2019_ERR3405857_bin.6_k141_9519_166 | 196980 | 197906 | - | 2.A.119.2.2 |
| pfam | ShaoY_2019_ERR3405857_bin.6_k141_9519 | ShaoY_2019_ERR3405857_bin.6_k141_9519_167 | 197938 | 198762 | - | PseudoU_synth_1 |
| TC | ShaoY_2019_ERR3405857_bin.6_k141_9519 | ShaoY_2019_ERR3405857_bin.6_k141_9519_168 | 198773 | 199531 | - | 3.A.1.26.10 |
| TC | ShaoY_2019_ERR3405857_bin.6_k141_9519 | ShaoY_2019_ERR3405857_bin.6_k141_9519_169 | 199524 | 201113 | - | 3.A.1.33.1 |
Gene ID: ShaoY_2019_ERR3405857_bin.6_k141_9519_162
Type: CAZyme
Location: 192652 - 193644 (-)
Type: CAZyme
Location: 192652 - 193644 (-)
Gene ID: ShaoY_2019_ERR3405857_bin.6_k141_9519_163
Type: CAZyme
Location: 193727 - 194851 (+)
Type: CAZyme
Location: 193727 - 194851 (+)
Gene ID: ShaoY_2019_ERR3405857_bin.6_k141_9519_164
Type: CAZyme
Location: 194936 - 196003 (-)
Type: CAZyme
Location: 194936 - 196003 (-)
Gene ID: ShaoY_2019_ERR3405857_bin.6_k141_9519_165
Type:
Location: 196165 - 196947 (-)
Type:
Location: 196165 - 196947 (-)
Gene ID: ShaoY_2019_ERR3405857_bin.6_k141_9519_166
Type: TC
Location: 196980 - 197906 (-)
Type: TC
Location: 196980 - 197906 (-)
Gene ID: ShaoY_2019_ERR3405857_bin.6_k141_9519_167
Type: pfam
Location: 197938 - 198762 (-)
Type: pfam
Location: 197938 - 198762 (-)
Gene ID: ShaoY_2019_ERR3405857_bin.6_k141_9519_168
Type: TC
Location: 198773 - 199531 (-)
Type: TC
Location: 198773 - 199531 (-)
Gene ID: ShaoY_2019_ERR3405857_bin.6_k141_9519_169
Type: TC
Location: 199524 - 201113 (-)
Type: TC
Location: 199524 - 201113 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Atopobiaceae
Genus
Thermophilibacter
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.