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Cluster: ShaoY_2019_ERR3405842_bin.9_CGC23

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme ShaoY_2019_ERR3405842_bin.9_k141_3483 ShaoY_2019_ERR3405842_bin.9_k141_3483_18 25067 28075 + GH2
NULL(UNKNOWN) ShaoY_2019_ERR3405842_bin.9_k141_3483 ShaoY_2019_ERR3405842_bin.9_k141_3483_19 28079 28534 + NULL(UNKNOWN)
[View Structural Homologs]
TC ShaoY_2019_ERR3405842_bin.9_k141_3483 ShaoY_2019_ERR3405842_bin.9_k141_3483_20 28688 30151 + 2.A.3.7.4
STP ShaoY_2019_ERR3405842_bin.9_k141_3483 ShaoY_2019_ERR3405842_bin.9_k141_3483_21 30575 30823 + PTS-HPr
STP ShaoY_2019_ERR3405842_bin.9_k141_3483 ShaoY_2019_ERR3405842_bin.9_k141_3483_22 31012 31254 + FeoA
TC ShaoY_2019_ERR3405842_bin.9_k141_3483 ShaoY_2019_ERR3405842_bin.9_k141_3483_23 31295 31516 + 9.A.8.1.6
TC ShaoY_2019_ERR3405842_bin.9_k141_3483 ShaoY_2019_ERR3405842_bin.9_k141_3483_24 31639 33966 + 9.A.8.1.6
Gene ID: ShaoY_2019_ERR3405842_bin.9_k141_3483_18
Type: CAZyme
Location: 25067 - 28075 (+)
Gene ID: ShaoY_2019_ERR3405842_bin.9_k141_3483_19
Type:
Location: 28079 - 28534 (+)
Gene ID: ShaoY_2019_ERR3405842_bin.9_k141_3483_20
Type: TC
Location: 28688 - 30151 (+)
Gene ID: ShaoY_2019_ERR3405842_bin.9_k141_3483_21
Type: STP
Location: 30575 - 30823 (+)
Gene ID: ShaoY_2019_ERR3405842_bin.9_k141_3483_22
Type: STP
Location: 31012 - 31254 (+)
Gene ID: ShaoY_2019_ERR3405842_bin.9_k141_3483_23
Type: TC
Location: 31295 - 31516 (+)
Gene ID: ShaoY_2019_ERR3405842_bin.9_k141_3483_24
Type: TC
Location: 31639 - 33966 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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