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Cluster: ShaoY_2019_ERR3405842_bin.9_CGC20

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC ShaoY_2019_ERR3405842_bin.9_k141_2676 ShaoY_2019_ERR3405842_bin.9_k141_2676_115 135699 136406 + 1.C.82.1.1
pfam ShaoY_2019_ERR3405842_bin.9_k141_2676 ShaoY_2019_ERR3405842_bin.9_k141_2676_116 136532 137242 - Metallophos | Metallophos_2
pfam ShaoY_2019_ERR3405842_bin.9_k141_2676 ShaoY_2019_ERR3405842_bin.9_k141_2676_117 137239 139155 - Bmp
TC ShaoY_2019_ERR3405842_bin.9_k141_2676 ShaoY_2019_ERR3405842_bin.9_k141_2676_118 139249 140016 - 1.A.23.4.10
pfam ShaoY_2019_ERR3405842_bin.9_k141_2676 ShaoY_2019_ERR3405842_bin.9_k141_2676_119 140145 142175 - Metallophos | 5_nucleotid_C
TC ShaoY_2019_ERR3405842_bin.9_k141_2676 ShaoY_2019_ERR3405842_bin.9_k141_2676_120 142248 143042 - 3.A.1.34.1
TC ShaoY_2019_ERR3405842_bin.9_k141_2676 ShaoY_2019_ERR3405842_bin.9_k141_2676_121 143035 143958 - 3.A.1.34.1
TC ShaoY_2019_ERR3405842_bin.9_k141_2676 ShaoY_2019_ERR3405842_bin.9_k141_2676_122 144163 145143 - 3.A.1.34.1
NULL(UNKNOWN) ShaoY_2019_ERR3405842_bin.9_k141_2676 ShaoY_2019_ERR3405842_bin.9_k141_2676_123 145303 146091 - NULL(UNKNOWN)
[View Structural Homologs]
pfam ShaoY_2019_ERR3405842_bin.9_k141_2676 ShaoY_2019_ERR3405842_bin.9_k141_2676_124 146340 147743 - tRNA-synt_2 | tRNA_anti-codon
TC ShaoY_2019_ERR3405842_bin.9_k141_2676 ShaoY_2019_ERR3405842_bin.9_k141_2676_125 147925 148488 - 4.A.1.2.6
peptidase ShaoY_2019_ERR3405842_bin.9_k141_2676 ShaoY_2019_ERR3405842_bin.9_k141_2676_126 148734 149636 + S09.UPW
TC ShaoY_2019_ERR3405842_bin.9_k141_2676 ShaoY_2019_ERR3405842_bin.9_k141_2676_127 150049 152409 + 9.A.8.1.6
TC ShaoY_2019_ERR3405842_bin.9_k141_2676 ShaoY_2019_ERR3405842_bin.9_k141_2676_128 152531 153727 + 2.A.1.2.18
CAZyme ShaoY_2019_ERR3405842_bin.9_k141_2676 ShaoY_2019_ERR3405842_bin.9_k141_2676_129 153910 155286 + GH13_20
Gene ID: ShaoY_2019_ERR3405842_bin.9_k141_2676_115
Type: TC
Location: 135699 - 136406 (+)
Gene ID: ShaoY_2019_ERR3405842_bin.9_k141_2676_116
Type: pfam
Location: 136532 - 137242 (-)
Gene ID: ShaoY_2019_ERR3405842_bin.9_k141_2676_117
Type: pfam
Location: 137239 - 139155 (-)
Gene ID: ShaoY_2019_ERR3405842_bin.9_k141_2676_118
Type: TC
Location: 139249 - 140016 (-)
Gene ID: ShaoY_2019_ERR3405842_bin.9_k141_2676_119
Type: pfam
Location: 140145 - 142175 (-)
Gene ID: ShaoY_2019_ERR3405842_bin.9_k141_2676_120
Type: TC
Location: 142248 - 143042 (-)
Gene ID: ShaoY_2019_ERR3405842_bin.9_k141_2676_121
Type: TC
Location: 143035 - 143958 (-)
Gene ID: ShaoY_2019_ERR3405842_bin.9_k141_2676_122
Type: TC
Location: 144163 - 145143 (-)
Gene ID: ShaoY_2019_ERR3405842_bin.9_k141_2676_123
Type:
Location: 145303 - 146091 (-)
Gene ID: ShaoY_2019_ERR3405842_bin.9_k141_2676_124
Type: pfam
Location: 146340 - 147743 (-)
Gene ID: ShaoY_2019_ERR3405842_bin.9_k141_2676_125
Type: TC
Location: 147925 - 148488 (-)
Gene ID: ShaoY_2019_ERR3405842_bin.9_k141_2676_126
Type: peptidase
Location: 148734 - 149636 (+)
Gene ID: ShaoY_2019_ERR3405842_bin.9_k141_2676_127
Type: TC
Location: 150049 - 152409 (+)
Gene ID: ShaoY_2019_ERR3405842_bin.9_k141_2676_128
Type: TC
Location: 152531 - 153727 (+)
Gene ID: ShaoY_2019_ERR3405842_bin.9_k141_2676_129
Type: CAZyme
Location: 153910 - 155286 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
ShaoY_2019_ERR3405842_bin.9_k141_2676_119 vegan > omnivore 1.89498 0.00776
ShaoY_2019_ERR3405842_bin.9_k141_2676_119 vegetarian > omnivore 1.39028 0.01882

🧭 Explore Read Mapping of CGC

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