Cluster: ShaoY_2019_ERR3405842_bin.9_CGC15
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 2
- Substrate:
- Genome ID: ShaoY_2019_ERR3405842_bin.9
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ShaoY_2019_ERR3405842_bin.9_k141_2271 | ShaoY_2019_ERR3405842_bin.9_k141_2271_98 | 97695 | 99389 | + | 4.A.3.1.1 |
| STP | ShaoY_2019_ERR3405842_bin.9_k141_2271 | ShaoY_2019_ERR3405842_bin.9_k141_2271_99 | 99552 | 99893 | + | DeoRC |
| pfam | ShaoY_2019_ERR3405842_bin.9_k141_2271 | ShaoY_2019_ERR3405842_bin.9_k141_2271_100 | 99931 | 101163 | - | Fic |
| CAZyme | ShaoY_2019_ERR3405842_bin.9_k141_2271 | ShaoY_2019_ERR3405842_bin.9_k141_2271_101 | 101700 | 103121 | - | GH1 |
| TC | ShaoY_2019_ERR3405842_bin.9_k141_2271 | ShaoY_2019_ERR3405842_bin.9_k141_2271_102 | 103198 | 104976 | - | 4.A.3.1.1 |
| TF | ShaoY_2019_ERR3405842_bin.9_k141_2271 | ShaoY_2019_ERR3405842_bin.9_k141_2271_103 | 105253 | 106263 | + | LacI |
| NULL(UNKNOWN) | ShaoY_2019_ERR3405842_bin.9_k141_2271 | ShaoY_2019_ERR3405842_bin.9_k141_2271_104 | 106508 | 106684 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | ShaoY_2019_ERR3405842_bin.9_k141_2271 | ShaoY_2019_ERR3405842_bin.9_k141_2271_105 | 106681 | 108120 | - | GH1 |
| TC | ShaoY_2019_ERR3405842_bin.9_k141_2271 | ShaoY_2019_ERR3405842_bin.9_k141_2271_106 | 108191 | 109966 | - | 4.A.3.1.1 |
| TF | ShaoY_2019_ERR3405842_bin.9_k141_2271 | ShaoY_2019_ERR3405842_bin.9_k141_2271_107 | 110323 | 111327 | + | LacI |
| TC | ShaoY_2019_ERR3405842_bin.9_k141_2271 | ShaoY_2019_ERR3405842_bin.9_k141_2271_108 | 111542 | 111880 | + | 4.A.3.1.2 |
Gene ID: ShaoY_2019_ERR3405842_bin.9_k141_2271_98
Type: TC
Location: 97695 - 99389 (+)
Type: TC
Location: 97695 - 99389 (+)
Gene ID: ShaoY_2019_ERR3405842_bin.9_k141_2271_99
Type: STP
Location: 99552 - 99893 (+)
Type: STP
Location: 99552 - 99893 (+)
Gene ID: ShaoY_2019_ERR3405842_bin.9_k141_2271_100
Type: pfam
Location: 99931 - 101163 (-)
Type: pfam
Location: 99931 - 101163 (-)
Gene ID: ShaoY_2019_ERR3405842_bin.9_k141_2271_101
Type: CAZyme
Location: 101700 - 103121 (-)
Type: CAZyme
Location: 101700 - 103121 (-)
Gene ID: ShaoY_2019_ERR3405842_bin.9_k141_2271_102
Type: TC
Location: 103198 - 104976 (-)
Type: TC
Location: 103198 - 104976 (-)
Gene ID: ShaoY_2019_ERR3405842_bin.9_k141_2271_103
Type: TF
Location: 105253 - 106263 (+)
Type: TF
Location: 105253 - 106263 (+)
Gene ID: ShaoY_2019_ERR3405842_bin.9_k141_2271_104
Type:
Location: 106508 - 106684 (+)
Type:
Location: 106508 - 106684 (+)
Gene ID: ShaoY_2019_ERR3405842_bin.9_k141_2271_105
Type: CAZyme
Location: 106681 - 108120 (-)
Type: CAZyme
Location: 106681 - 108120 (-)
Gene ID: ShaoY_2019_ERR3405842_bin.9_k141_2271_106
Type: TC
Location: 108191 - 109966 (-)
Type: TC
Location: 108191 - 109966 (-)
Gene ID: ShaoY_2019_ERR3405842_bin.9_k141_2271_107
Type: TF
Location: 110323 - 111327 (+)
Type: TF
Location: 110323 - 111327 (+)
Gene ID: ShaoY_2019_ERR3405842_bin.9_k141_2271_108
Type: TC
Location: 111542 - 111880 (+)
Type: TC
Location: 111542 - 111880 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.