Cluster: ShaoY_2019_ERR3405831_bin.2_CGC99
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: ShaoY_2019_ERR3405831_bin.2
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ShaoY_2019_ERR3405831_bin.2_k141_5359 | ShaoY_2019_ERR3405831_bin.2_k141_5359_2 | 2033 | 2926 | + | 3.A.1.1.20 |
| TC | ShaoY_2019_ERR3405831_bin.2_k141_5359 | ShaoY_2019_ERR3405831_bin.2_k141_5359_3 | 2937 | 3767 | + | 3.A.1.1.18 |
| CAZyme | ShaoY_2019_ERR3405831_bin.2_k141_5359 | ShaoY_2019_ERR3405831_bin.2_k141_5359_4 | 3801 | 6398 | + | GH116 |
| TF | ShaoY_2019_ERR3405831_bin.2_k141_5359 | ShaoY_2019_ERR3405831_bin.2_k141_5359_5 | 6527 | 7774 | - | HTH_AraC | HTH_AraC |
| TC | ShaoY_2019_ERR3405831_bin.2_k141_5359 | ShaoY_2019_ERR3405831_bin.2_k141_5359_6 | 7767 | 9569 | - | 8.A.59.2.1 |
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_5359_2
Type: TC
Location: 2033 - 2926 (+)
Type: TC
Location: 2033 - 2926 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_5359_3
Type: TC
Location: 2937 - 3767 (+)
Type: TC
Location: 2937 - 3767 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_5359_4
Type: CAZyme
Location: 3801 - 6398 (+)
Type: CAZyme
Location: 3801 - 6398 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_5359_5
Type: TF
Location: 6527 - 7774 (-)
Type: TF
Location: 6527 - 7774 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_5359_6
Type: TC
Location: 7767 - 9569 (-)
Type: TC
Location: 7767 - 9569 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Robinsoniella
Species
Robinsoniella sp900555455
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.