Cluster: ShaoY_2019_ERR3405831_bin.2_CGC94
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 4
- Substrate:
- Genome ID: ShaoY_2019_ERR3405831_bin.2
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | ShaoY_2019_ERR3405831_bin.2_k141_5256 | ShaoY_2019_ERR3405831_bin.2_k141_5256_140 | 190435 | 191955 | - | GH51_1 |
| TC | ShaoY_2019_ERR3405831_bin.2_k141_5256 | ShaoY_2019_ERR3405831_bin.2_k141_5256_141 | 191970 | 192827 | - | 3.A.1.1.34 |
| TC | ShaoY_2019_ERR3405831_bin.2_k141_5256 | ShaoY_2019_ERR3405831_bin.2_k141_5256_142 | 192832 | 193773 | - | 3.A.1.1.34 |
| TC | ShaoY_2019_ERR3405831_bin.2_k141_5256 | ShaoY_2019_ERR3405831_bin.2_k141_5256_143 | 193907 | 195340 | - | 3.A.1.1.34 |
| CAZyme | ShaoY_2019_ERR3405831_bin.2_k141_5256 | ShaoY_2019_ERR3405831_bin.2_k141_5256_144 | 195353 | 197290 | - | GH127 |
| TF | ShaoY_2019_ERR3405831_bin.2_k141_5256 | ShaoY_2019_ERR3405831_bin.2_k141_5256_145 | 197536 | 198594 | - | LacI |
| CAZyme | ShaoY_2019_ERR3405831_bin.2_k141_5256 | ShaoY_2019_ERR3405831_bin.2_k141_5256_146 | 199126 | 201075 | - | CBM48 | GH13_9 |
| CAZyme | ShaoY_2019_ERR3405831_bin.2_k141_5256 | ShaoY_2019_ERR3405831_bin.2_k141_5256_147 | 201080 | 202438 | - | GH13_20 |
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_5256_140
Type: CAZyme
Location: 190435 - 191955 (-)
Type: CAZyme
Location: 190435 - 191955 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_5256_141
Type: TC
Location: 191970 - 192827 (-)
Type: TC
Location: 191970 - 192827 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_5256_142
Type: TC
Location: 192832 - 193773 (-)
Type: TC
Location: 192832 - 193773 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_5256_143
Type: TC
Location: 193907 - 195340 (-)
Type: TC
Location: 193907 - 195340 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_5256_144
Type: CAZyme
Location: 195353 - 197290 (-)
Type: CAZyme
Location: 195353 - 197290 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_5256_145
Type: TF
Location: 197536 - 198594 (-)
Type: TF
Location: 197536 - 198594 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_5256_146
Type: CAZyme
Location: 199126 - 201075 (-)
Type: CAZyme
Location: 199126 - 201075 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_5256_147
Type: CAZyme
Location: 201080 - 202438 (-)
Type: CAZyme
Location: 201080 - 202438 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Robinsoniella
Species
Robinsoniella sp900555455
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.