Cluster: ShaoY_2019_ERR3405831_bin.2_CGC92
🧬 Cluster Details
- Gene Count: 19
- CAZyme Count: 3
- Substrate:
- Genome ID: ShaoY_2019_ERR3405831_bin.2
- CGC Family ID: CGCFAM_04997
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | ShaoY_2019_ERR3405831_bin.2_k141_5256 | ShaoY_2019_ERR3405831_bin.2_k141_5256_72 | 90074 | 97243 | - | GH136 | GH20 |
| TF | ShaoY_2019_ERR3405831_bin.2_k141_5256 | ShaoY_2019_ERR3405831_bin.2_k141_5256_73 | 97700 | 99244 | - | HTH_AraC | HTH_AraC |
| TC | ShaoY_2019_ERR3405831_bin.2_k141_5256 | ShaoY_2019_ERR3405831_bin.2_k141_5256_74 | 99414 | 101240 | - | 9.B.33.1.1 |
| TC | ShaoY_2019_ERR3405831_bin.2_k141_5256 | ShaoY_2019_ERR3405831_bin.2_k141_5256_75 | 101331 | 102149 | - | 3.A.1.1.28 |
| TC | ShaoY_2019_ERR3405831_bin.2_k141_5256 | ShaoY_2019_ERR3405831_bin.2_k141_5256_76 | 102172 | 103053 | - | 3.A.1.1.28 |
| TC | ShaoY_2019_ERR3405831_bin.2_k141_5256 | ShaoY_2019_ERR3405831_bin.2_k141_5256_77 | 103078 | 104376 | - | 3.A.1.1.47 |
| pfam | ShaoY_2019_ERR3405831_bin.2_k141_5256 | ShaoY_2019_ERR3405831_bin.2_k141_5256_78 | 104622 | 105272 | - | RloB |
| pfam | ShaoY_2019_ERR3405831_bin.2_k141_5256 | ShaoY_2019_ERR3405831_bin.2_k141_5256_79 | 105275 | 106540 | - | AAA_21 | AAA_21 |
| TC | ShaoY_2019_ERR3405831_bin.2_k141_5256 | ShaoY_2019_ERR3405831_bin.2_k141_5256_80 | 106794 | 108995 | - | 2.A.6.4.2 |
| NULL(UNKNOWN) | ShaoY_2019_ERR3405831_bin.2_k141_5256 | ShaoY_2019_ERR3405831_bin.2_k141_5256_81 | 109077 | 109508 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | ShaoY_2019_ERR3405831_bin.2_k141_5256 | ShaoY_2019_ERR3405831_bin.2_k141_5256_82 | 109739 | 110185 | + | Cupin_2 |
| CAZyme | ShaoY_2019_ERR3405831_bin.2_k141_5256 | ShaoY_2019_ERR3405831_bin.2_k141_5256_83 | 110290 | 112215 | - | GH127 |
| TC | ShaoY_2019_ERR3405831_bin.2_k141_5256 | ShaoY_2019_ERR3405831_bin.2_k141_5256_84 | 112557 | 113390 | - | 3.A.1.1.41 |
| TC | ShaoY_2019_ERR3405831_bin.2_k141_5256 | ShaoY_2019_ERR3405831_bin.2_k141_5256_85 | 113392 | 114297 | - | 3.A.1.1.19 |
| STP | ShaoY_2019_ERR3405831_bin.2_k141_5256 | ShaoY_2019_ERR3405831_bin.2_k141_5256_86 | 114354 | 115715 | - | SBP_bac_1 |
| TC | ShaoY_2019_ERR3405831_bin.2_k141_5256 | ShaoY_2019_ERR3405831_bin.2_k141_5256_87 | 115989 | 117155 | - | 3.A.1.1.2 |
| TF | ShaoY_2019_ERR3405831_bin.2_k141_5256 | ShaoY_2019_ERR3405831_bin.2_k141_5256_88 | 117196 | 118707 | - | HTH_AraC |
| TC | ShaoY_2019_ERR3405831_bin.2_k141_5256 | ShaoY_2019_ERR3405831_bin.2_k141_5256_89 | 118688 | 120529 | - | 8.A.59.2.1 |
| CAZyme | ShaoY_2019_ERR3405831_bin.2_k141_5256 | ShaoY_2019_ERR3405831_bin.2_k141_5256_90 | 120851 | 127861 | - | GH121 |
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_5256_72
Type: CAZyme
Location: 90074 - 97243 (-)
Type: CAZyme
Location: 90074 - 97243 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_5256_73
Type: TF
Location: 97700 - 99244 (-)
Type: TF
Location: 97700 - 99244 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_5256_74
Type: TC
Location: 99414 - 101240 (-)
Type: TC
Location: 99414 - 101240 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_5256_75
Type: TC
Location: 101331 - 102149 (-)
Type: TC
Location: 101331 - 102149 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_5256_76
Type: TC
Location: 102172 - 103053 (-)
Type: TC
Location: 102172 - 103053 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_5256_77
Type: TC
Location: 103078 - 104376 (-)
Type: TC
Location: 103078 - 104376 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_5256_78
Type: pfam
Location: 104622 - 105272 (-)
Type: pfam
Location: 104622 - 105272 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_5256_79
Type: pfam
Location: 105275 - 106540 (-)
Type: pfam
Location: 105275 - 106540 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_5256_80
Type: TC
Location: 106794 - 108995 (-)
Type: TC
Location: 106794 - 108995 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_5256_81
Type:
Location: 109077 - 109508 (-)
Type:
Location: 109077 - 109508 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_5256_82
Type: pfam
Location: 109739 - 110185 (+)
Type: pfam
Location: 109739 - 110185 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_5256_83
Type: CAZyme
Location: 110290 - 112215 (-)
Type: CAZyme
Location: 110290 - 112215 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_5256_84
Type: TC
Location: 112557 - 113390 (-)
Type: TC
Location: 112557 - 113390 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_5256_85
Type: TC
Location: 113392 - 114297 (-)
Type: TC
Location: 113392 - 114297 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_5256_86
Type: STP
Location: 114354 - 115715 (-)
Type: STP
Location: 114354 - 115715 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_5256_87
Type: TC
Location: 115989 - 117155 (-)
Type: TC
Location: 115989 - 117155 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_5256_88
Type: TF
Location: 117196 - 118707 (-)
Type: TF
Location: 117196 - 118707 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_5256_89
Type: TC
Location: 118688 - 120529 (-)
Type: TC
Location: 118688 - 120529 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_5256_90
Type: CAZyme
Location: 120851 - 127861 (-)
Type: CAZyme
Location: 120851 - 127861 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Robinsoniella
Species
Robinsoniella sp900555455
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.