Cluster: ShaoY_2019_ERR3405831_bin.2_CGC90
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 3
- Substrate:
- Genome ID: ShaoY_2019_ERR3405831_bin.2
- CGC Family ID: CGCFAM_02593
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | ShaoY_2019_ERR3405831_bin.2_k141_5256 | ShaoY_2019_ERR3405831_bin.2_k141_5256_41 | 44932 | 47166 | - | GH31_3 |
| TC | ShaoY_2019_ERR3405831_bin.2_k141_5256 | ShaoY_2019_ERR3405831_bin.2_k141_5256_42 | 47232 | 47843 | - | 9.B.28.1.8 |
| CAZyme | ShaoY_2019_ERR3405831_bin.2_k141_5256 | ShaoY_2019_ERR3405831_bin.2_k141_5256_43 | 47873 | 49861 | - | GH31_4 |
| TC | ShaoY_2019_ERR3405831_bin.2_k141_5256 | ShaoY_2019_ERR3405831_bin.2_k141_5256_44 | 49974 | 50843 | - | 3.A.1.1.33 |
| TC | ShaoY_2019_ERR3405831_bin.2_k141_5256 | ShaoY_2019_ERR3405831_bin.2_k141_5256_45 | 50845 | 51738 | - | 3.A.1.1.41 |
| STP | ShaoY_2019_ERR3405831_bin.2_k141_5256 | ShaoY_2019_ERR3405831_bin.2_k141_5256_46 | 51840 | 53249 | - | SBP_bac_1 |
| TF | ShaoY_2019_ERR3405831_bin.2_k141_5256 | ShaoY_2019_ERR3405831_bin.2_k141_5256_47 | 53408 | 54148 | - | HTH_AraC |
| TC | ShaoY_2019_ERR3405831_bin.2_k141_5256 | ShaoY_2019_ERR3405831_bin.2_k141_5256_48 | 54123 | 55979 | - | 8.A.59.2.1 |
| pfam | ShaoY_2019_ERR3405831_bin.2_k141_5256 | ShaoY_2019_ERR3405831_bin.2_k141_5256_49 | 57984 | 59153 | - | Radical_SAM |
| STP | ShaoY_2019_ERR3405831_bin.2_k141_5256 | ShaoY_2019_ERR3405831_bin.2_k141_5256_50 | 59227 | 60135 | - | PfkB |
| CAZyme | ShaoY_2019_ERR3405831_bin.2_k141_5256 | ShaoY_2019_ERR3405831_bin.2_k141_5256_51 | 60137 | 61519 | - | GH4 |
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_5256_41
Type: CAZyme
Location: 44932 - 47166 (-)
Type: CAZyme
Location: 44932 - 47166 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_5256_42
Type: TC
Location: 47232 - 47843 (-)
Type: TC
Location: 47232 - 47843 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_5256_43
Type: CAZyme
Location: 47873 - 49861 (-)
Type: CAZyme
Location: 47873 - 49861 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_5256_44
Type: TC
Location: 49974 - 50843 (-)
Type: TC
Location: 49974 - 50843 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_5256_45
Type: TC
Location: 50845 - 51738 (-)
Type: TC
Location: 50845 - 51738 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_5256_46
Type: STP
Location: 51840 - 53249 (-)
Type: STP
Location: 51840 - 53249 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_5256_47
Type: TF
Location: 53408 - 54148 (-)
Type: TF
Location: 53408 - 54148 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_5256_48
Type: TC
Location: 54123 - 55979 (-)
Type: TC
Location: 54123 - 55979 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_5256_49
Type: pfam
Location: 57984 - 59153 (-)
Type: pfam
Location: 57984 - 59153 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_5256_50
Type: STP
Location: 59227 - 60135 (-)
Type: STP
Location: 59227 - 60135 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_5256_51
Type: CAZyme
Location: 60137 - 61519 (-)
Type: CAZyme
Location: 60137 - 61519 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Robinsoniella
Species
Robinsoniella sp900555455
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.