Cluster: ShaoY_2019_ERR3405831_bin.2_CGC88
🧬 Cluster Details
- Gene Count: 9
- CAZyme Count: 1
- Substrate:
- Genome ID: ShaoY_2019_ERR3405831_bin.2
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | ShaoY_2019_ERR3405831_bin.2_k141_5051 | ShaoY_2019_ERR3405831_bin.2_k141_5051_25 | 31306 | 33462 | - | GH112 |
| pfam | ShaoY_2019_ERR3405831_bin.2_k141_5051 | ShaoY_2019_ERR3405831_bin.2_k141_5051_26 | 33502 | 33681 | - | DUF6903 |
| TC | ShaoY_2019_ERR3405831_bin.2_k141_5051 | ShaoY_2019_ERR3405831_bin.2_k141_5051_27 | 33695 | 34579 | - | 3.A.1.1.18 |
| TC | ShaoY_2019_ERR3405831_bin.2_k141_5051 | ShaoY_2019_ERR3405831_bin.2_k141_5051_28 | 34594 | 35493 | - | 3.A.1.1.20 |
| STP | ShaoY_2019_ERR3405831_bin.2_k141_5051 | ShaoY_2019_ERR3405831_bin.2_k141_5051_29 | 35591 | 37045 | - | SBP_bac_1 |
| TF | ShaoY_2019_ERR3405831_bin.2_k141_5051 | ShaoY_2019_ERR3405831_bin.2_k141_5051_30 | 37448 | 38272 | + | HTH_AraC | HTH_AraC |
| TC | ShaoY_2019_ERR3405831_bin.2_k141_5051 | ShaoY_2019_ERR3405831_bin.2_k141_5051_31 | 38309 | 39688 | - | 3.A.1.122.2 |
| NULL(UNKNOWN) | ShaoY_2019_ERR3405831_bin.2_k141_5051 | ShaoY_2019_ERR3405831_bin.2_k141_5051_32 | 39706 | 41433 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | ShaoY_2019_ERR3405831_bin.2_k141_5051 | ShaoY_2019_ERR3405831_bin.2_k141_5051_33 | 41497 | 42246 | - | 3.A.1.122.14 |
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_5051_25
Type: CAZyme
Location: 31306 - 33462 (-)
Type: CAZyme
Location: 31306 - 33462 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_5051_26
Type: pfam
Location: 33502 - 33681 (-)
Type: pfam
Location: 33502 - 33681 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_5051_27
Type: TC
Location: 33695 - 34579 (-)
Type: TC
Location: 33695 - 34579 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_5051_28
Type: TC
Location: 34594 - 35493 (-)
Type: TC
Location: 34594 - 35493 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_5051_29
Type: STP
Location: 35591 - 37045 (-)
Type: STP
Location: 35591 - 37045 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_5051_30
Type: TF
Location: 37448 - 38272 (+)
Type: TF
Location: 37448 - 38272 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_5051_31
Type: TC
Location: 38309 - 39688 (-)
Type: TC
Location: 38309 - 39688 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_5051_32
Type:
Location: 39706 - 41433 (-)
Type:
Location: 39706 - 41433 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_5051_33
Type: TC
Location: 41497 - 42246 (-)
Type: TC
Location: 41497 - 42246 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Robinsoniella
Species
Robinsoniella sp900555455
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.