Cluster: ShaoY_2019_ERR3405831_bin.2_CGC87
🧬 Cluster Details
- Gene Count: 9
- CAZyme Count: 1
- Substrate:
- Genome ID: ShaoY_2019_ERR3405831_bin.2
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ShaoY_2019_ERR3405831_bin.2_k141_5051 | ShaoY_2019_ERR3405831_bin.2_k141_5051_13 | 10927 | 11985 | - | 3.A.1.2.16 |
| STP | ShaoY_2019_ERR3405831_bin.2_k141_5051 | ShaoY_2019_ERR3405831_bin.2_k141_5051_14 | 12001 | 12969 | - | Peripla_BP_1 |
| TC | ShaoY_2019_ERR3405831_bin.2_k141_5051 | ShaoY_2019_ERR3405831_bin.2_k141_5051_15 | 12966 | 14780 | - | 8.A.59.2.1 |
| TF | ShaoY_2019_ERR3405831_bin.2_k141_5051 | ShaoY_2019_ERR3405831_bin.2_k141_5051_16 | 14792 | 16405 | - | HTH_AraC | HTH_AraC |
| NULL(UNKNOWN) | ShaoY_2019_ERR3405831_bin.2_k141_5051 | ShaoY_2019_ERR3405831_bin.2_k141_5051_17 | 16572 | 16751 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | ShaoY_2019_ERR3405831_bin.2_k141_5051 | ShaoY_2019_ERR3405831_bin.2_k141_5051_18 | 16812 | 17843 | - | 3.A.1.2.3 |
| TC | ShaoY_2019_ERR3405831_bin.2_k141_5051 | ShaoY_2019_ERR3405831_bin.2_k141_5051_19 | 17861 | 19357 | - | 3.A.1.2.3 |
| TC | ShaoY_2019_ERR3405831_bin.2_k141_5051 | ShaoY_2019_ERR3405831_bin.2_k141_5051_20 | 19435 | 20562 | - | 3.A.1.2.3 |
| CAZyme | ShaoY_2019_ERR3405831_bin.2_k141_5051 | ShaoY_2019_ERR3405831_bin.2_k141_5051_21 | 20829 | 27659 | - | GH101 |
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_5051_13
Type: TC
Location: 10927 - 11985 (-)
Type: TC
Location: 10927 - 11985 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_5051_14
Type: STP
Location: 12001 - 12969 (-)
Type: STP
Location: 12001 - 12969 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_5051_15
Type: TC
Location: 12966 - 14780 (-)
Type: TC
Location: 12966 - 14780 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_5051_16
Type: TF
Location: 14792 - 16405 (-)
Type: TF
Location: 14792 - 16405 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_5051_17
Type:
Location: 16572 - 16751 (-)
Type:
Location: 16572 - 16751 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_5051_18
Type: TC
Location: 16812 - 17843 (-)
Type: TC
Location: 16812 - 17843 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_5051_19
Type: TC
Location: 17861 - 19357 (-)
Type: TC
Location: 17861 - 19357 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_5051_20
Type: TC
Location: 19435 - 20562 (-)
Type: TC
Location: 19435 - 20562 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_5051_21
Type: CAZyme
Location: 20829 - 27659 (-)
Type: CAZyme
Location: 20829 - 27659 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Robinsoniella
Species
Robinsoniella sp900555455
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.