Cluster: ShaoY_2019_ERR3405831_bin.2_CGC82
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 5
- Substrate:
- Genome ID: ShaoY_2019_ERR3405831_bin.2
- CGC Family ID: CGCFAM_08787
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ShaoY_2019_ERR3405831_bin.2_k141_4807 | ShaoY_2019_ERR3405831_bin.2_k141_4807_63 | 71707 | 72462 | + | 8.A.3.2.3 |
| TC | ShaoY_2019_ERR3405831_bin.2_k141_4807 | ShaoY_2019_ERR3405831_bin.2_k141_4807_64 | 72494 | 73900 | + | 9.B.18.1.2 |
| CAZyme | ShaoY_2019_ERR3405831_bin.2_k141_4807 | ShaoY_2019_ERR3405831_bin.2_k141_4807_65 | 74123 | 75322 | + | GT4 |
| pfam | ShaoY_2019_ERR3405831_bin.2_k141_4807 | ShaoY_2019_ERR3405831_bin.2_k141_4807_66 | 75347 | 75898 | + | dTDP_sugar_isom |
| CAZyme | ShaoY_2019_ERR3405831_bin.2_k141_4807 | ShaoY_2019_ERR3405831_bin.2_k141_4807_67 | 75920 | 77179 | + | GT4 |
| CAZyme | ShaoY_2019_ERR3405831_bin.2_k141_4807 | ShaoY_2019_ERR3405831_bin.2_k141_4807_68 | 77176 | 78330 | + | GT4 |
| CAZyme | ShaoY_2019_ERR3405831_bin.2_k141_4807 | ShaoY_2019_ERR3405831_bin.2_k141_4807_69 | 78323 | 79312 | + | GT2 |
| TC | ShaoY_2019_ERR3405831_bin.2_k141_4807 | ShaoY_2019_ERR3405831_bin.2_k141_4807_70 | 79328 | 80470 | + | 9.B.183.1.3 |
| pfam | ShaoY_2019_ERR3405831_bin.2_k141_4807 | ShaoY_2019_ERR3405831_bin.2_k141_4807_71 | 80499 | 81587 | + | PS_pyruv_trans |
| pfam | ShaoY_2019_ERR3405831_bin.2_k141_4807 | ShaoY_2019_ERR3405831_bin.2_k141_4807_72 | 81589 | 82998 | + | Polysacc_synt | Polysacc_synt_3 |
| CAZyme | ShaoY_2019_ERR3405831_bin.2_k141_4807 | ShaoY_2019_ERR3405831_bin.2_k141_4807_73 | 83012 | 84016 | + | GT2 |
| TC | ShaoY_2019_ERR3405831_bin.2_k141_4807 | ShaoY_2019_ERR3405831_bin.2_k141_4807_74 | 84858 | 85856 | + | 9.B.97.6.3 |
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_4807_63
Type: TC
Location: 71707 - 72462 (+)
Type: TC
Location: 71707 - 72462 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_4807_64
Type: TC
Location: 72494 - 73900 (+)
Type: TC
Location: 72494 - 73900 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_4807_65
Type: CAZyme
Location: 74123 - 75322 (+)
Type: CAZyme
Location: 74123 - 75322 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_4807_66
Type: pfam
Location: 75347 - 75898 (+)
Type: pfam
Location: 75347 - 75898 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_4807_67
Type: CAZyme
Location: 75920 - 77179 (+)
Type: CAZyme
Location: 75920 - 77179 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_4807_68
Type: CAZyme
Location: 77176 - 78330 (+)
Type: CAZyme
Location: 77176 - 78330 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_4807_69
Type: CAZyme
Location: 78323 - 79312 (+)
Type: CAZyme
Location: 78323 - 79312 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_4807_70
Type: TC
Location: 79328 - 80470 (+)
Type: TC
Location: 79328 - 80470 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_4807_71
Type: pfam
Location: 80499 - 81587 (+)
Type: pfam
Location: 80499 - 81587 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_4807_72
Type: pfam
Location: 81589 - 82998 (+)
Type: pfam
Location: 81589 - 82998 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_4807_73
Type: CAZyme
Location: 83012 - 84016 (+)
Type: CAZyme
Location: 83012 - 84016 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_4807_74
Type: TC
Location: 84858 - 85856 (+)
Type: TC
Location: 84858 - 85856 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Robinsoniella
Species
Robinsoniella sp900555455
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.