Cluster: ShaoY_2019_ERR3405831_bin.2_CGC80
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 3
- Substrate:
- Genome ID: ShaoY_2019_ERR3405831_bin.2
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ShaoY_2019_ERR3405831_bin.2_k141_4615 | ShaoY_2019_ERR3405831_bin.2_k141_4615_55 | 61348 | 62028 | + | 2.A.115.2.8 |
| STP | ShaoY_2019_ERR3405831_bin.2_k141_4615 | ShaoY_2019_ERR3405831_bin.2_k141_4615_56 | 62072 | 64018 | - | Pyr_redox_2 |
| pfam | ShaoY_2019_ERR3405831_bin.2_k141_4615 | ShaoY_2019_ERR3405831_bin.2_k141_4615_57 | 64027 | 65010 | - | ROK |
| CAZyme | ShaoY_2019_ERR3405831_bin.2_k141_4615 | ShaoY_2019_ERR3405831_bin.2_k141_4615_58 | 64991 | 66433 | - | GH1 |
| CAZyme | ShaoY_2019_ERR3405831_bin.2_k141_4615 | ShaoY_2019_ERR3405831_bin.2_k141_4615_59 | 66472 | 67995 | - | CE20 |
| pfam | ShaoY_2019_ERR3405831_bin.2_k141_4615 | ShaoY_2019_ERR3405831_bin.2_k141_4615_60 | 68181 | 69005 | - | Lactamase_B |
| CAZyme | ShaoY_2019_ERR3405831_bin.2_k141_4615 | ShaoY_2019_ERR3405831_bin.2_k141_4615_61 | 69023 | 71779 | - | CBM67 | GH78 |
| TC | ShaoY_2019_ERR3405831_bin.2_k141_4615 | ShaoY_2019_ERR3405831_bin.2_k141_4615_62 | 71829 | 73202 | - | 2.A.2.3.2 |
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_4615_55
Type: TC
Location: 61348 - 62028 (+)
Type: TC
Location: 61348 - 62028 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_4615_56
Type: STP
Location: 62072 - 64018 (-)
Type: STP
Location: 62072 - 64018 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_4615_57
Type: pfam
Location: 64027 - 65010 (-)
Type: pfam
Location: 64027 - 65010 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_4615_58
Type: CAZyme
Location: 64991 - 66433 (-)
Type: CAZyme
Location: 64991 - 66433 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_4615_59
Type: CAZyme
Location: 66472 - 67995 (-)
Type: CAZyme
Location: 66472 - 67995 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_4615_60
Type: pfam
Location: 68181 - 69005 (-)
Type: pfam
Location: 68181 - 69005 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_4615_61
Type: CAZyme
Location: 69023 - 71779 (-)
Type: CAZyme
Location: 69023 - 71779 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_4615_62
Type: TC
Location: 71829 - 73202 (-)
Type: TC
Location: 71829 - 73202 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Robinsoniella
Species
Robinsoniella sp900555455
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.