Cluster: ShaoY_2019_ERR3405831_bin.2_CGC8
🧬 Cluster Details
- Gene Count: 9
- CAZyme Count: 3
- Substrate:
- Genome ID: ShaoY_2019_ERR3405831_bin.2
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | ShaoY_2019_ERR3405831_bin.2_k141_1073 | ShaoY_2019_ERR3405831_bin.2_k141_1073_59 | 70006 | 71331 | + | GH125 |
| CAZyme | ShaoY_2019_ERR3405831_bin.2_k141_1073 | ShaoY_2019_ERR3405831_bin.2_k141_1073_60 | 71553 | 74690 | + | GH38 |
| NULL(UNKNOWN) | ShaoY_2019_ERR3405831_bin.2_k141_1073 | ShaoY_2019_ERR3405831_bin.2_k141_1073_61 | 74803 | 75483 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | ShaoY_2019_ERR3405831_bin.2_k141_1073 | ShaoY_2019_ERR3405831_bin.2_k141_1073_62 | 75626 | 77365 | + | 8.A.59.2.1 |
| TF | ShaoY_2019_ERR3405831_bin.2_k141_1073 | ShaoY_2019_ERR3405831_bin.2_k141_1073_63 | 77343 | 78869 | + | HTH_AraC | HTH_AraC |
| TC | ShaoY_2019_ERR3405831_bin.2_k141_1073 | ShaoY_2019_ERR3405831_bin.2_k141_1073_64 | 79006 | 79950 | + | 3.A.1.1.29 |
| TC | ShaoY_2019_ERR3405831_bin.2_k141_1073 | ShaoY_2019_ERR3405831_bin.2_k141_1073_65 | 79963 | 80922 | + | 3.A.1.1.29 |
| STP | ShaoY_2019_ERR3405831_bin.2_k141_1073 | ShaoY_2019_ERR3405831_bin.2_k141_1073_66 | 81071 | 82576 | + | SBP_bac_1 |
| CAZyme | ShaoY_2019_ERR3405831_bin.2_k141_1073 | ShaoY_2019_ERR3405831_bin.2_k141_1073_67 | 82728 | 85163 | + | GH2 |
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_1073_59
Type: CAZyme
Location: 70006 - 71331 (+)
Type: CAZyme
Location: 70006 - 71331 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_1073_60
Type: CAZyme
Location: 71553 - 74690 (+)
Type: CAZyme
Location: 71553 - 74690 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_1073_61
Type:
Location: 74803 - 75483 (+)
Type:
Location: 74803 - 75483 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_1073_62
Type: TC
Location: 75626 - 77365 (+)
Type: TC
Location: 75626 - 77365 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_1073_63
Type: TF
Location: 77343 - 78869 (+)
Type: TF
Location: 77343 - 78869 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_1073_64
Type: TC
Location: 79006 - 79950 (+)
Type: TC
Location: 79006 - 79950 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_1073_65
Type: TC
Location: 79963 - 80922 (+)
Type: TC
Location: 79963 - 80922 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_1073_66
Type: STP
Location: 81071 - 82576 (+)
Type: STP
Location: 81071 - 82576 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_1073_67
Type: CAZyme
Location: 82728 - 85163 (+)
Type: CAZyme
Location: 82728 - 85163 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Robinsoniella
Species
Robinsoniella sp900555455
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.