Cluster: ShaoY_2019_ERR3405831_bin.2_CGC77
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 6
- Substrate:
- Genome ID: ShaoY_2019_ERR3405831_bin.2
- CGC Family ID: CGCFAM_05423
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ShaoY_2019_ERR3405831_bin.2_k141_4456 | ShaoY_2019_ERR3405831_bin.2_k141_4456_53 | 63592 | 64935 | - | 2.A.2.3.4 |
| CAZyme | ShaoY_2019_ERR3405831_bin.2_k141_4456 | ShaoY_2019_ERR3405831_bin.2_k141_4456_54 | 64948 | 66567 | - | CBM91 | GH43_12 |
| CAZyme | ShaoY_2019_ERR3405831_bin.2_k141_4456 | ShaoY_2019_ERR3405831_bin.2_k141_4456_55 | 66786 | 69563 | - | CBM67 | GH78 |
| TC | ShaoY_2019_ERR3405831_bin.2_k141_4456 | ShaoY_2019_ERR3405831_bin.2_k141_4456_56 | 69591 | 70949 | - | 2.A.2.3.2 |
| TF | ShaoY_2019_ERR3405831_bin.2_k141_4456 | ShaoY_2019_ERR3405831_bin.2_k141_4456_57 | 71143 | 72588 | - | HTH_AraC | HTH_AraC |
| CAZyme | ShaoY_2019_ERR3405831_bin.2_k141_4456 | ShaoY_2019_ERR3405831_bin.2_k141_4456_58 | 72627 | 73775 | - | GH1 |
| CAZyme | ShaoY_2019_ERR3405831_bin.2_k141_4456 | ShaoY_2019_ERR3405831_bin.2_k141_4456_59 | 73811 | 76453 | - | GH3 |
| peptidase | ShaoY_2019_ERR3405831_bin.2_k141_4456 | ShaoY_2019_ERR3405831_bin.2_k141_4456_60 | 77021 | 77983 | - | S09.UPW |
| TF | ShaoY_2019_ERR3405831_bin.2_k141_4456 | ShaoY_2019_ERR3405831_bin.2_k141_4456_61 | 77996 | 79189 | - | HTH_AraC | HTH_AraC |
| CAZyme | ShaoY_2019_ERR3405831_bin.2_k141_4456 | ShaoY_2019_ERR3405831_bin.2_k141_4456_62 | 79211 | 81469 | - | GH3 |
| CAZyme | ShaoY_2019_ERR3405831_bin.2_k141_4456 | ShaoY_2019_ERR3405831_bin.2_k141_4456_63 | 81490 | 84237 | - | CBM67 | GH78 |
| TC | ShaoY_2019_ERR3405831_bin.2_k141_4456 | ShaoY_2019_ERR3405831_bin.2_k141_4456_64 | 84248 | 85615 | - | 2.A.2.3.3 |
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_4456_53
Type: TC
Location: 63592 - 64935 (-)
Type: TC
Location: 63592 - 64935 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_4456_54
Type: CAZyme
Location: 64948 - 66567 (-)
Type: CAZyme
Location: 64948 - 66567 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_4456_55
Type: CAZyme
Location: 66786 - 69563 (-)
Type: CAZyme
Location: 66786 - 69563 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_4456_56
Type: TC
Location: 69591 - 70949 (-)
Type: TC
Location: 69591 - 70949 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_4456_57
Type: TF
Location: 71143 - 72588 (-)
Type: TF
Location: 71143 - 72588 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_4456_58
Type: CAZyme
Location: 72627 - 73775 (-)
Type: CAZyme
Location: 72627 - 73775 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_4456_59
Type: CAZyme
Location: 73811 - 76453 (-)
Type: CAZyme
Location: 73811 - 76453 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_4456_60
Type: peptidase
Location: 77021 - 77983 (-)
Type: peptidase
Location: 77021 - 77983 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_4456_61
Type: TF
Location: 77996 - 79189 (-)
Type: TF
Location: 77996 - 79189 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_4456_62
Type: CAZyme
Location: 79211 - 81469 (-)
Type: CAZyme
Location: 79211 - 81469 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_4456_63
Type: CAZyme
Location: 81490 - 84237 (-)
Type: CAZyme
Location: 81490 - 84237 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_4456_64
Type: TC
Location: 84248 - 85615 (-)
Type: TC
Location: 84248 - 85615 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Robinsoniella
Species
Robinsoniella sp900555455
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.