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Cluster: ShaoY_2019_ERR3405831_bin.2_CGC76

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme ShaoY_2019_ERR3405831_bin.2_k141_4456 ShaoY_2019_ERR3405831_bin.2_k141_4456_18 26403 28295 - GH127
TF ShaoY_2019_ERR3405831_bin.2_k141_4456 ShaoY_2019_ERR3405831_bin.2_k141_4456_19 28367 29386 - LacI
pfam ShaoY_2019_ERR3405831_bin.2_k141_4456 ShaoY_2019_ERR3405831_bin.2_k141_4456_20 29437 30684 - Amidohydro_2
TC ShaoY_2019_ERR3405831_bin.2_k141_4456 ShaoY_2019_ERR3405831_bin.2_k141_4456_21 30681 31520 - 3.A.1.1.45
TC ShaoY_2019_ERR3405831_bin.2_k141_4456 ShaoY_2019_ERR3405831_bin.2_k141_4456_22 31520 32362 - 3.A.1.1.45
TC ShaoY_2019_ERR3405831_bin.2_k141_4456 ShaoY_2019_ERR3405831_bin.2_k141_4456_23 32432 33871 - 3.A.1.1.45
TF ShaoY_2019_ERR3405831_bin.2_k141_4456 ShaoY_2019_ERR3405831_bin.2_k141_4456_24 34073 35011 + HTH_AraC | HTH_AraC
pfam ShaoY_2019_ERR3405831_bin.2_k141_4456 ShaoY_2019_ERR3405831_bin.2_k141_4456_25 35139 35942 - Metallophos | Metallophos_2
TC ShaoY_2019_ERR3405831_bin.2_k141_4456 ShaoY_2019_ERR3405831_bin.2_k141_4456_26 36000 37004 - 3.A.1.5.20
pfam ShaoY_2019_ERR3405831_bin.2_k141_4456 ShaoY_2019_ERR3405831_bin.2_k141_4456_27 37036 37503 - LOR
TC ShaoY_2019_ERR3405831_bin.2_k141_4456 ShaoY_2019_ERR3405831_bin.2_k141_4456_28 37642 38646 - 3.A.1.5.15
TC ShaoY_2019_ERR3405831_bin.2_k141_4456 ShaoY_2019_ERR3405831_bin.2_k141_4456_29 38739 39554 - 3.A.1.5.20
TC ShaoY_2019_ERR3405831_bin.2_k141_4456 ShaoY_2019_ERR3405831_bin.2_k141_4456_30 39564 40505 - 3.A.1.5.20
TC ShaoY_2019_ERR3405831_bin.2_k141_4456 ShaoY_2019_ERR3405831_bin.2_k141_4456_31 40528 42162 - 3.A.1.5.39
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_4456_18
Type: CAZyme
Location: 26403 - 28295 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_4456_19
Type: TF
Location: 28367 - 29386 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_4456_20
Type: pfam
Location: 29437 - 30684 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_4456_21
Type: TC
Location: 30681 - 31520 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_4456_22
Type: TC
Location: 31520 - 32362 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_4456_23
Type: TC
Location: 32432 - 33871 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_4456_24
Type: TF
Location: 34073 - 35011 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_4456_25
Type: pfam
Location: 35139 - 35942 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_4456_26
Type: TC
Location: 36000 - 37004 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_4456_27
Type: pfam
Location: 37036 - 37503 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_4456_28
Type: TC
Location: 37642 - 38646 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_4456_29
Type: TC
Location: 38739 - 39554 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_4456_30
Type: TC
Location: 39564 - 40505 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_4456_31
Type: TC
Location: 40528 - 42162 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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