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Cluster: ShaoY_2019_ERR3405831_bin.2_CGC74

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme ShaoY_2019_ERR3405831_bin.2_k141_4114 ShaoY_2019_ERR3405831_bin.2_k141_4114_48 59087 61021 - GH20
TF ShaoY_2019_ERR3405831_bin.2_k141_4114 ShaoY_2019_ERR3405831_bin.2_k141_4114_49 61018 62523 - HTH_AraC
STP ShaoY_2019_ERR3405831_bin.2_k141_4114 ShaoY_2019_ERR3405831_bin.2_k141_4114_50 62495 64261 - dCache_1
TC ShaoY_2019_ERR3405831_bin.2_k141_4114 ShaoY_2019_ERR3405831_bin.2_k141_4114_51 64460 65281 - 3.A.1.1.45
TC ShaoY_2019_ERR3405831_bin.2_k141_4114 ShaoY_2019_ERR3405831_bin.2_k141_4114_52 65281 66171 - 3.A.1.1.42
STP ShaoY_2019_ERR3405831_bin.2_k141_4114 ShaoY_2019_ERR3405831_bin.2_k141_4114_53 66224 67597 - SBP_bac_1
CAZyme ShaoY_2019_ERR3405831_bin.2_k141_4114 ShaoY_2019_ERR3405831_bin.2_k141_4114_54 67757 70411 - GH16_3
TF ShaoY_2019_ERR3405831_bin.2_k141_4114 ShaoY_2019_ERR3405831_bin.2_k141_4114_55 70804 71799 + LacI
pfam ShaoY_2019_ERR3405831_bin.2_k141_4114 ShaoY_2019_ERR3405831_bin.2_k141_4114_56 72299 73750 + ADP_ribosyl_GH
TC ShaoY_2019_ERR3405831_bin.2_k141_4114 ShaoY_2019_ERR3405831_bin.2_k141_4114_57 73809 75143 + 2.A.3.8.12
STP ShaoY_2019_ERR3405831_bin.2_k141_4114 ShaoY_2019_ERR3405831_bin.2_k141_4114_58 75197 76036 - NUDIX
TC ShaoY_2019_ERR3405831_bin.2_k141_4114 ShaoY_2019_ERR3405831_bin.2_k141_4114_59 76142 76834 - 2.A.122.1.4
TC ShaoY_2019_ERR3405831_bin.2_k141_4114 ShaoY_2019_ERR3405831_bin.2_k141_4114_60 76815 77195 - 1.E.14.1.17
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_4114_48
Type: CAZyme
Location: 59087 - 61021 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_4114_49
Type: TF
Location: 61018 - 62523 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_4114_50
Type: STP
Location: 62495 - 64261 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_4114_51
Type: TC
Location: 64460 - 65281 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_4114_52
Type: TC
Location: 65281 - 66171 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_4114_53
Type: STP
Location: 66224 - 67597 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_4114_54
Type: CAZyme
Location: 67757 - 70411 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_4114_55
Type: TF
Location: 70804 - 71799 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_4114_56
Type: pfam
Location: 72299 - 73750 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_4114_57
Type: TC
Location: 73809 - 75143 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_4114_58
Type: STP
Location: 75197 - 76036 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_4114_59
Type: TC
Location: 76142 - 76834 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_4114_60
Type: TC
Location: 76815 - 77195 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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