Cluster: ShaoY_2019_ERR3405831_bin.2_CGC71
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: ShaoY_2019_ERR3405831_bin.2
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | ShaoY_2019_ERR3405831_bin.2_k141_3833 | ShaoY_2019_ERR3405831_bin.2_k141_3833_52 | 60355 | 61257 | + | GH43_17 |
| TF | ShaoY_2019_ERR3405831_bin.2_k141_3833 | ShaoY_2019_ERR3405831_bin.2_k141_3833_53 | 61208 | 61921 | + | Trans_reg_C |
| STP | ShaoY_2019_ERR3405831_bin.2_k141_3833 | ShaoY_2019_ERR3405831_bin.2_k141_3833_54 | 61911 | 62936 | + | HATPase_c | HisKA |
| TC | ShaoY_2019_ERR3405831_bin.2_k141_3833 | ShaoY_2019_ERR3405831_bin.2_k141_3833_55 | 63239 | 63907 | + | 3.A.1.122.14 |
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_3833_52
Type: CAZyme
Location: 60355 - 61257 (+)
Type: CAZyme
Location: 60355 - 61257 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_3833_53
Type: TF
Location: 61208 - 61921 (+)
Type: TF
Location: 61208 - 61921 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_3833_54
Type: STP
Location: 61911 - 62936 (+)
Type: STP
Location: 61911 - 62936 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_3833_55
Type: TC
Location: 63239 - 63907 (+)
Type: TC
Location: 63239 - 63907 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Robinsoniella
Species
Robinsoniella sp900555455
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.