Cluster: ShaoY_2019_ERR3405831_bin.2_CGC70
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 3
- Substrate:
- Genome ID: ShaoY_2019_ERR3405831_bin.2
- CGC Family ID: CGCFAM_01406
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | ShaoY_2019_ERR3405831_bin.2_k141_3833 | ShaoY_2019_ERR3405831_bin.2_k141_3833_16 | 15915 | 17357 | + | GH32 |
| STP | ShaoY_2019_ERR3405831_bin.2_k141_3833 | ShaoY_2019_ERR3405831_bin.2_k141_3833_17 | 17400 | 18812 | + | SBP_bac_1 |
| TC | ShaoY_2019_ERR3405831_bin.2_k141_3833 | ShaoY_2019_ERR3405831_bin.2_k141_3833_18 | 18891 | 19820 | + | 3.A.1.1.32 |
| TC | ShaoY_2019_ERR3405831_bin.2_k141_3833 | ShaoY_2019_ERR3405831_bin.2_k141_3833_19 | 19817 | 20644 | + | 3.A.1.1.47 |
| CAZyme | ShaoY_2019_ERR3405831_bin.2_k141_3833 | ShaoY_2019_ERR3405831_bin.2_k141_3833_20 | 20708 | 21820 | + | GH172 |
| NULL(UNKNOWN) | ShaoY_2019_ERR3405831_bin.2_k141_3833 | ShaoY_2019_ERR3405831_bin.2_k141_3833_21 | 21915 | 23180 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | ShaoY_2019_ERR3405831_bin.2_k141_3833 | ShaoY_2019_ERR3405831_bin.2_k141_3833_22 | 23324 | 24262 | - | Metallophos |
| CAZyme | ShaoY_2019_ERR3405831_bin.2_k141_3833 | ShaoY_2019_ERR3405831_bin.2_k141_3833_23 | 24469 | 28359 | - | GH98 |
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_3833_16
Type: CAZyme
Location: 15915 - 17357 (+)
Type: CAZyme
Location: 15915 - 17357 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_3833_17
Type: STP
Location: 17400 - 18812 (+)
Type: STP
Location: 17400 - 18812 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_3833_18
Type: TC
Location: 18891 - 19820 (+)
Type: TC
Location: 18891 - 19820 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_3833_19
Type: TC
Location: 19817 - 20644 (+)
Type: TC
Location: 19817 - 20644 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_3833_20
Type: CAZyme
Location: 20708 - 21820 (+)
Type: CAZyme
Location: 20708 - 21820 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_3833_21
Type:
Location: 21915 - 23180 (+)
Type:
Location: 21915 - 23180 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_3833_22
Type: pfam
Location: 23324 - 24262 (-)
Type: pfam
Location: 23324 - 24262 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_3833_23
Type: CAZyme
Location: 24469 - 28359 (-)
Type: CAZyme
Location: 24469 - 28359 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Robinsoniella
Species
Robinsoniella sp900555455
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.