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Cluster: ShaoY_2019_ERR3405831_bin.2_CGC7

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC ShaoY_2019_ERR3405831_bin.2_k141_1073 ShaoY_2019_ERR3405831_bin.2_k141_1073_8 7062 8702 + 3.A.1.121.2
NULL(UNKNOWN) ShaoY_2019_ERR3405831_bin.2_k141_1073 ShaoY_2019_ERR3405831_bin.2_k141_1073_9 8926 9852 - NULL(UNKNOWN)
[View Structural Homologs]
TF ShaoY_2019_ERR3405831_bin.2_k141_1073 ShaoY_2019_ERR3405831_bin.2_k141_1073_10 10191 11753 + 0035607 | 0036286
TC ShaoY_2019_ERR3405831_bin.2_k141_1073 ShaoY_2019_ERR3405831_bin.2_k141_1073_11 11716 13473 + 8.A.59.2.1
STP ShaoY_2019_ERR3405831_bin.2_k141_1073 ShaoY_2019_ERR3405831_bin.2_k141_1073_12 13577 14968 + SBP_bac_1
TC ShaoY_2019_ERR3405831_bin.2_k141_1073 ShaoY_2019_ERR3405831_bin.2_k141_1073_13 15032 15949 + 3.A.1.1.34
TC ShaoY_2019_ERR3405831_bin.2_k141_1073 ShaoY_2019_ERR3405831_bin.2_k141_1073_14 15946 16773 + 3.A.1.1.34
CAZyme ShaoY_2019_ERR3405831_bin.2_k141_1073 ShaoY_2019_ERR3405831_bin.2_k141_1073_15 16784 19069 + GH35
TC ShaoY_2019_ERR3405831_bin.2_k141_1073 ShaoY_2019_ERR3405831_bin.2_k141_1073_16 19406 20287 + 2.A.4.7.2
TC ShaoY_2019_ERR3405831_bin.2_k141_1073 ShaoY_2019_ERR3405831_bin.2_k141_1073_17 20301 21650 - 2.A.66.1.28
TF ShaoY_2019_ERR3405831_bin.2_k141_1073 ShaoY_2019_ERR3405831_bin.2_k141_1073_18 22451 23125 + Trans_reg_C
STP ShaoY_2019_ERR3405831_bin.2_k141_1073 ShaoY_2019_ERR3405831_bin.2_k141_1073_19 23113 24306 + HATPase_c | HisKA
TC ShaoY_2019_ERR3405831_bin.2_k141_1073 ShaoY_2019_ERR3405831_bin.2_k141_1073_20 24373 25251 + 3.A.1.148.3
NULL(UNKNOWN) ShaoY_2019_ERR3405831_bin.2_k141_1073 ShaoY_2019_ERR3405831_bin.2_k141_1073_21 25251 26519 + NULL(UNKNOWN)
[View Structural Homologs]
NULL(UNKNOWN) ShaoY_2019_ERR3405831_bin.2_k141_1073 ShaoY_2019_ERR3405831_bin.2_k141_1073_22 26476 27093 + NULL(UNKNOWN)
[View Structural Homologs]
TC ShaoY_2019_ERR3405831_bin.2_k141_1073 ShaoY_2019_ERR3405831_bin.2_k141_1073_23 27379 29691 + 2.A.16.2.2
pfam ShaoY_2019_ERR3405831_bin.2_k141_1073 ShaoY_2019_ERR3405831_bin.2_k141_1073_24 29873 31336 + Mur_ligase | Mur_ligase_C | Mur_ligase_M
TC ShaoY_2019_ERR3405831_bin.2_k141_1073 ShaoY_2019_ERR3405831_bin.2_k141_1073_25 31366 33588 + 3.A.11.3.1
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_1073_8
Type: TC
Location: 7062 - 8702 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_1073_9
Type:
Location: 8926 - 9852 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_1073_10
Type: TF
Location: 10191 - 11753 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_1073_11
Type: TC
Location: 11716 - 13473 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_1073_12
Type: STP
Location: 13577 - 14968 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_1073_13
Type: TC
Location: 15032 - 15949 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_1073_14
Type: TC
Location: 15946 - 16773 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_1073_15
Type: CAZyme
Location: 16784 - 19069 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_1073_16
Type: TC
Location: 19406 - 20287 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_1073_17
Type: TC
Location: 20301 - 21650 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_1073_18
Type: TF
Location: 22451 - 23125 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_1073_19
Type: STP
Location: 23113 - 24306 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_1073_20
Type: TC
Location: 24373 - 25251 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_1073_21
Type:
Location: 25251 - 26519 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_1073_22
Type:
Location: 26476 - 27093 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_1073_23
Type: TC
Location: 27379 - 29691 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_1073_24
Type: pfam
Location: 29873 - 31336 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_1073_25
Type: TC
Location: 31366 - 33588 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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