Cluster: ShaoY_2019_ERR3405831_bin.2_CGC69
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 5
- Substrate:
- Genome ID: ShaoY_2019_ERR3405831_bin.2
- CGC Family ID: CGCFAM_01039
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | ShaoY_2019_ERR3405831_bin.2_k141_3712 | ShaoY_2019_ERR3405831_bin.2_k141_3712_2 | 1832 | 3235 | + | GH43_35 |
| TC | ShaoY_2019_ERR3405831_bin.2_k141_3712 | ShaoY_2019_ERR3405831_bin.2_k141_3712_3 | 3299 | 5059 | + | 8.A.59.2.1 |
| TF | ShaoY_2019_ERR3405831_bin.2_k141_3712 | ShaoY_2019_ERR3405831_bin.2_k141_3712_4 | 5076 | 6626 | + | HTH_AraC | HTH_AraC |
| CAZyme | ShaoY_2019_ERR3405831_bin.2_k141_3712 | ShaoY_2019_ERR3405831_bin.2_k141_3712_5 | 6665 | 9367 | + | GH106 |
| CAZyme | ShaoY_2019_ERR3405831_bin.2_k141_3712 | ShaoY_2019_ERR3405831_bin.2_k141_3712_6 | 9394 | 10731 | + | GH1 |
| CAZyme | ShaoY_2019_ERR3405831_bin.2_k141_3712 | ShaoY_2019_ERR3405831_bin.2_k141_3712_7 | 10757 | 13597 | + | GH106 |
| TC | ShaoY_2019_ERR3405831_bin.2_k141_3712 | ShaoY_2019_ERR3405831_bin.2_k141_3712_8 | 13947 | 15716 | + | 9.B.33.1.1 |
| TF | ShaoY_2019_ERR3405831_bin.2_k141_3712 | ShaoY_2019_ERR3405831_bin.2_k141_3712_9 | 15713 | 17185 | + | HTH_AraC |
| STP | ShaoY_2019_ERR3405831_bin.2_k141_3712 | ShaoY_2019_ERR3405831_bin.2_k141_3712_10 | 17324 | 18712 | + | SBP_bac_1 |
| TC | ShaoY_2019_ERR3405831_bin.2_k141_3712 | ShaoY_2019_ERR3405831_bin.2_k141_3712_11 | 18808 | 19692 | + | 3.A.1.1.28 |
| TC | ShaoY_2019_ERR3405831_bin.2_k141_3712 | ShaoY_2019_ERR3405831_bin.2_k141_3712_12 | 19692 | 20519 | + | 3.A.1.1.18 |
| CAZyme | ShaoY_2019_ERR3405831_bin.2_k141_3712 | ShaoY_2019_ERR3405831_bin.2_k141_3712_13 | 20557 | 23235 | + | CBM67 | GH78 |
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_3712_2
Type: CAZyme
Location: 1832 - 3235 (+)
Type: CAZyme
Location: 1832 - 3235 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_3712_3
Type: TC
Location: 3299 - 5059 (+)
Type: TC
Location: 3299 - 5059 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_3712_4
Type: TF
Location: 5076 - 6626 (+)
Type: TF
Location: 5076 - 6626 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_3712_5
Type: CAZyme
Location: 6665 - 9367 (+)
Type: CAZyme
Location: 6665 - 9367 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_3712_6
Type: CAZyme
Location: 9394 - 10731 (+)
Type: CAZyme
Location: 9394 - 10731 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_3712_7
Type: CAZyme
Location: 10757 - 13597 (+)
Type: CAZyme
Location: 10757 - 13597 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_3712_8
Type: TC
Location: 13947 - 15716 (+)
Type: TC
Location: 13947 - 15716 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_3712_9
Type: TF
Location: 15713 - 17185 (+)
Type: TF
Location: 15713 - 17185 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_3712_10
Type: STP
Location: 17324 - 18712 (+)
Type: STP
Location: 17324 - 18712 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_3712_11
Type: TC
Location: 18808 - 19692 (+)
Type: TC
Location: 18808 - 19692 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_3712_12
Type: TC
Location: 19692 - 20519 (+)
Type: TC
Location: 19692 - 20519 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_3712_13
Type: CAZyme
Location: 20557 - 23235 (+)
Type: CAZyme
Location: 20557 - 23235 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Robinsoniella
Species
Robinsoniella sp900555455
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.