dbCAN Logo

Cluster: ShaoY_2019_ERR3405831_bin.2_CGC68

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC ShaoY_2019_ERR3405831_bin.2_k141_3558 ShaoY_2019_ERR3405831_bin.2_k141_3558_12 19821 20801 + 3.A.1.1.10
TC ShaoY_2019_ERR3405831_bin.2_k141_3558 ShaoY_2019_ERR3405831_bin.2_k141_3558_13 20816 21706 + 3.A.1.1.29
pfam ShaoY_2019_ERR3405831_bin.2_k141_3558 ShaoY_2019_ERR3405831_bin.2_k141_3558_14 21763 23403 + DUF3502
pfam ShaoY_2019_ERR3405831_bin.2_k141_3558 ShaoY_2019_ERR3405831_bin.2_k141_3558_15 23414 24625 + GFO_IDH_MocA | GFO_IDH_MocA_C | GFO_IDH_MocA_C3
CAZyme ShaoY_2019_ERR3405831_bin.2_k141_3558 ShaoY_2019_ERR3405831_bin.2_k141_3558_16 24760 29763 + GH141
CAZyme ShaoY_2019_ERR3405831_bin.2_k141_3558 ShaoY_2019_ERR3405831_bin.2_k141_3558_17 30059 36307 + CBM32
TF ShaoY_2019_ERR3405831_bin.2_k141_3558 ShaoY_2019_ERR3405831_bin.2_k141_3558_18 36670 37356 + Trans_reg_C
STP ShaoY_2019_ERR3405831_bin.2_k141_3558 ShaoY_2019_ERR3405831_bin.2_k141_3558_19 37343 38332 + HATPase_c | HisKA
TC ShaoY_2019_ERR3405831_bin.2_k141_3558 ShaoY_2019_ERR3405831_bin.2_k141_3558_20 38437 39126 + 3.A.1.125.3
pfam ShaoY_2019_ERR3405831_bin.2_k141_3558 ShaoY_2019_ERR3405831_bin.2_k141_3558_21 39123 41705 + FtsX | FtsX | MacB_PCD
TC ShaoY_2019_ERR3405831_bin.2_k141_3558 ShaoY_2019_ERR3405831_bin.2_k141_3558_22 41820 43061 - 2.A.37.3.3
pfam ShaoY_2019_ERR3405831_bin.2_k141_3558 ShaoY_2019_ERR3405831_bin.2_k141_3558_23 43244 44695 + DDE_Tnp_IS240 | rve_3
STP ShaoY_2019_ERR3405831_bin.2_k141_3558 ShaoY_2019_ERR3405831_bin.2_k141_3558_24 44987 45616 - TetR_N
TC ShaoY_2019_ERR3405831_bin.2_k141_3558 ShaoY_2019_ERR3405831_bin.2_k141_3558_25 45936 47051 + 3.A.1.2.3
TC ShaoY_2019_ERR3405831_bin.2_k141_3558 ShaoY_2019_ERR3405831_bin.2_k141_3558_26 47131 48630 + 3.A.1.2.3
TC ShaoY_2019_ERR3405831_bin.2_k141_3558 ShaoY_2019_ERR3405831_bin.2_k141_3558_27 48701 49930 + 3.A.1.2.3
TF ShaoY_2019_ERR3405831_bin.2_k141_3558 ShaoY_2019_ERR3405831_bin.2_k141_3558_28 49953 50813 - HTH_AraC | HTH_AraC
CAZyme ShaoY_2019_ERR3405831_bin.2_k141_3558 ShaoY_2019_ERR3405831_bin.2_k141_3558_29 50947 54381 + GH106
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_3558_12
Type: TC
Location: 19821 - 20801 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_3558_13
Type: TC
Location: 20816 - 21706 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_3558_14
Type: pfam
Location: 21763 - 23403 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_3558_15
Type: pfam
Location: 23414 - 24625 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_3558_16
Type: CAZyme
Location: 24760 - 29763 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_3558_17
Type: CAZyme
Location: 30059 - 36307 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_3558_18
Type: TF
Location: 36670 - 37356 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_3558_19
Type: STP
Location: 37343 - 38332 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_3558_20
Type: TC
Location: 38437 - 39126 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_3558_21
Type: pfam
Location: 39123 - 41705 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_3558_22
Type: TC
Location: 41820 - 43061 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_3558_23
Type: pfam
Location: 43244 - 44695 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_3558_24
Type: STP
Location: 44987 - 45616 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_3558_25
Type: TC
Location: 45936 - 47051 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_3558_26
Type: TC
Location: 47131 - 48630 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_3558_27
Type: TC
Location: 48701 - 49930 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_3558_28
Type: TF
Location: 49953 - 50813 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_3558_29
Type: CAZyme
Location: 50947 - 54381 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

← Back to Cluster List