Cluster: ShaoY_2019_ERR3405831_bin.2_CGC65
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 3
- Substrate:
- Genome ID: ShaoY_2019_ERR3405831_bin.2
- CGC Family ID: CGCFAM_04995
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ShaoY_2019_ERR3405831_bin.2_k141_3532 | ShaoY_2019_ERR3405831_bin.2_k141_3532_38 | 47788 | 49293 | + | 3.A.1.2.20 |
| TC | ShaoY_2019_ERR3405831_bin.2_k141_3532 | ShaoY_2019_ERR3405831_bin.2_k141_3532_39 | 49271 | 50236 | + | 3.A.1.2.1 |
| CAZyme | ShaoY_2019_ERR3405831_bin.2_k141_3532 | ShaoY_2019_ERR3405831_bin.2_k141_3532_40 | 50305 | 51480 | + | GH179 |
| TF | ShaoY_2019_ERR3405831_bin.2_k141_3532 | ShaoY_2019_ERR3405831_bin.2_k141_3532_41 | 51581 | 53614 | - | LacI |
| pfam | ShaoY_2019_ERR3405831_bin.2_k141_3532 | ShaoY_2019_ERR3405831_bin.2_k141_3532_42 | 53762 | 55276 | - | FGGY_N | FGGY_C |
| CAZyme | ShaoY_2019_ERR3405831_bin.2_k141_3532 | ShaoY_2019_ERR3405831_bin.2_k141_3532_43 | 55679 | 58495 | + | CBM67 | GH78 |
| STP | ShaoY_2019_ERR3405831_bin.2_k141_3532 | ShaoY_2019_ERR3405831_bin.2_k141_3532_44 | 58511 | 59659 | + | Peripla_BP_1 |
| TC | ShaoY_2019_ERR3405831_bin.2_k141_3532 | ShaoY_2019_ERR3405831_bin.2_k141_3532_45 | 59825 | 61297 | + | 3.A.1.2.20 |
| TC | ShaoY_2019_ERR3405831_bin.2_k141_3532 | ShaoY_2019_ERR3405831_bin.2_k141_3532_46 | 61299 | 62252 | + | 3.A.1.2.1 |
| CAZyme | ShaoY_2019_ERR3405831_bin.2_k141_3532 | ShaoY_2019_ERR3405831_bin.2_k141_3532_47 | 62267 | 63226 | + | GH105 |
| TF | ShaoY_2019_ERR3405831_bin.2_k141_3532 | ShaoY_2019_ERR3405831_bin.2_k141_3532_48 | 63243 | 64319 | + | LacI |
| TC | ShaoY_2019_ERR3405831_bin.2_k141_3532 | ShaoY_2019_ERR3405831_bin.2_k141_3532_49 | 64365 | 65354 | + | 8.A.5.1.3 |
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_3532_38
Type: TC
Location: 47788 - 49293 (+)
Type: TC
Location: 47788 - 49293 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_3532_39
Type: TC
Location: 49271 - 50236 (+)
Type: TC
Location: 49271 - 50236 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_3532_40
Type: CAZyme
Location: 50305 - 51480 (+)
Type: CAZyme
Location: 50305 - 51480 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_3532_41
Type: TF
Location: 51581 - 53614 (-)
Type: TF
Location: 51581 - 53614 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_3532_42
Type: pfam
Location: 53762 - 55276 (-)
Type: pfam
Location: 53762 - 55276 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_3532_43
Type: CAZyme
Location: 55679 - 58495 (+)
Type: CAZyme
Location: 55679 - 58495 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_3532_44
Type: STP
Location: 58511 - 59659 (+)
Type: STP
Location: 58511 - 59659 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_3532_45
Type: TC
Location: 59825 - 61297 (+)
Type: TC
Location: 59825 - 61297 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_3532_46
Type: TC
Location: 61299 - 62252 (+)
Type: TC
Location: 61299 - 62252 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_3532_47
Type: CAZyme
Location: 62267 - 63226 (+)
Type: CAZyme
Location: 62267 - 63226 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_3532_48
Type: TF
Location: 63243 - 64319 (+)
Type: TF
Location: 63243 - 64319 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_3532_49
Type: TC
Location: 64365 - 65354 (+)
Type: TC
Location: 64365 - 65354 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Robinsoniella
Species
Robinsoniella sp900555455
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.