Cluster: ShaoY_2019_ERR3405831_bin.2_CGC60
🧬 Cluster Details
- Gene Count: 9
- CAZyme Count: 1
- Substrate:
- Genome ID: ShaoY_2019_ERR3405831_bin.2
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ShaoY_2019_ERR3405831_bin.2_k141_3336 | ShaoY_2019_ERR3405831_bin.2_k141_3336_67 | 72236 | 73954 | - | 3.A.6.3.1 |
| pfam | ShaoY_2019_ERR3405831_bin.2_k141_3336 | ShaoY_2019_ERR3405831_bin.2_k141_3336_68 | 74168 | 74542 | - | DUF3792 |
| NULL(UNKNOWN) | ShaoY_2019_ERR3405831_bin.2_k141_3336 | ShaoY_2019_ERR3405831_bin.2_k141_3336_69 | 74729 | 76639 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | ShaoY_2019_ERR3405831_bin.2_k141_3336 | ShaoY_2019_ERR3405831_bin.2_k141_3336_70 | 76864 | 78183 | + | 9.A.40.2.4 |
| CAZyme | ShaoY_2019_ERR3405831_bin.2_k141_3336 | ShaoY_2019_ERR3405831_bin.2_k141_3336_71 | 78303 | 85025 | - | CBM71 | GH2 |
| STP | ShaoY_2019_ERR3405831_bin.2_k141_3336 | ShaoY_2019_ERR3405831_bin.2_k141_3336_72 | 85166 | 86014 | - | Sigma70_r3 |
| TC | ShaoY_2019_ERR3405831_bin.2_k141_3336 | ShaoY_2019_ERR3405831_bin.2_k141_3336_73 | 86036 | 87292 | - | 9.B.174.1.2 |
| pfam | ShaoY_2019_ERR3405831_bin.2_k141_3336 | ShaoY_2019_ERR3405831_bin.2_k141_3336_74 | 87740 | 88828 | - | HTH_30 | GGDEF_2 |
| TC | ShaoY_2019_ERR3405831_bin.2_k141_3336 | ShaoY_2019_ERR3405831_bin.2_k141_3336_75 | 88976 | 89854 | - | 2.A.115.1.2 |
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_3336_67
Type: TC
Location: 72236 - 73954 (-)
Type: TC
Location: 72236 - 73954 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_3336_68
Type: pfam
Location: 74168 - 74542 (-)
Type: pfam
Location: 74168 - 74542 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_3336_69
Type:
Location: 74729 - 76639 (-)
Type:
Location: 74729 - 76639 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_3336_70
Type: TC
Location: 76864 - 78183 (+)
Type: TC
Location: 76864 - 78183 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_3336_71
Type: CAZyme
Location: 78303 - 85025 (-)
Type: CAZyme
Location: 78303 - 85025 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_3336_72
Type: STP
Location: 85166 - 86014 (-)
Type: STP
Location: 85166 - 86014 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_3336_73
Type: TC
Location: 86036 - 87292 (-)
Type: TC
Location: 86036 - 87292 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_3336_74
Type: pfam
Location: 87740 - 88828 (-)
Type: pfam
Location: 87740 - 88828 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_3336_75
Type: TC
Location: 88976 - 89854 (-)
Type: TC
Location: 88976 - 89854 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Robinsoniella
Species
Robinsoniella sp900555455
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.