Cluster: ShaoY_2019_ERR3405831_bin.2_CGC57
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 2
- Substrate:
- Genome ID: ShaoY_2019_ERR3405831_bin.2
- CGC Family ID: CGCFAM_04887
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ShaoY_2019_ERR3405831_bin.2_k141_2973 | ShaoY_2019_ERR3405831_bin.2_k141_2973_56 | 63385 | 64269 | - | 3.A.1.1.29 |
| TC | ShaoY_2019_ERR3405831_bin.2_k141_2973 | ShaoY_2019_ERR3405831_bin.2_k141_2973_57 | 64281 | 65210 | - | 3.A.1.1.10 |
| STP | ShaoY_2019_ERR3405831_bin.2_k141_2973 | ShaoY_2019_ERR3405831_bin.2_k141_2973_58 | 65226 | 66761 | - | SBP_bac_1 |
| TF | ShaoY_2019_ERR3405831_bin.2_k141_2973 | ShaoY_2019_ERR3405831_bin.2_k141_2973_59 | 66915 | 68504 | - | HTH_AraC |
| TC | ShaoY_2019_ERR3405831_bin.2_k141_2973 | ShaoY_2019_ERR3405831_bin.2_k141_2973_60 | 68678 | 70384 | - | 9.B.33.1.2 |
| CAZyme | ShaoY_2019_ERR3405831_bin.2_k141_2973 | ShaoY_2019_ERR3405831_bin.2_k141_2973_61 | 70684 | 71799 | - | CE2 |
| peptidase | ShaoY_2019_ERR3405831_bin.2_k141_2973 | ShaoY_2019_ERR3405831_bin.2_k141_2973_62 | 71828 | 72820 | - | S09.UPW |
| pfam | ShaoY_2019_ERR3405831_bin.2_k141_2973 | ShaoY_2019_ERR3405831_bin.2_k141_2973_63 | 72858 | 74048 | - | Lipase_GDSL | Lipase_GDSL_2 |
| CAZyme | ShaoY_2019_ERR3405831_bin.2_k141_2973 | ShaoY_2019_ERR3405831_bin.2_k141_2973_64 | 74342 | 75640 | - | GH4 |
| TC | ShaoY_2019_ERR3405831_bin.2_k141_2973 | ShaoY_2019_ERR3405831_bin.2_k141_2973_65 | 75798 | 76679 | - | 3.A.1.1.9 |
| TC | ShaoY_2019_ERR3405831_bin.2_k141_2973 | ShaoY_2019_ERR3405831_bin.2_k141_2973_66 | 76695 | 77594 | - | 3.A.1.1.9 |
| TC | ShaoY_2019_ERR3405831_bin.2_k141_2973 | ShaoY_2019_ERR3405831_bin.2_k141_2973_67 | 77625 | 79298 | - | 3.A.1.1.10 |
| TC | ShaoY_2019_ERR3405831_bin.2_k141_2973 | ShaoY_2019_ERR3405831_bin.2_k141_2973_68 | 79568 | 81274 | + | 8.A.59.2.1 |
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_2973_56
Type: TC
Location: 63385 - 64269 (-)
Type: TC
Location: 63385 - 64269 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_2973_57
Type: TC
Location: 64281 - 65210 (-)
Type: TC
Location: 64281 - 65210 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_2973_58
Type: STP
Location: 65226 - 66761 (-)
Type: STP
Location: 65226 - 66761 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_2973_59
Type: TF
Location: 66915 - 68504 (-)
Type: TF
Location: 66915 - 68504 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_2973_60
Type: TC
Location: 68678 - 70384 (-)
Type: TC
Location: 68678 - 70384 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_2973_61
Type: CAZyme
Location: 70684 - 71799 (-)
Type: CAZyme
Location: 70684 - 71799 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_2973_62
Type: peptidase
Location: 71828 - 72820 (-)
Type: peptidase
Location: 71828 - 72820 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_2973_63
Type: pfam
Location: 72858 - 74048 (-)
Type: pfam
Location: 72858 - 74048 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_2973_64
Type: CAZyme
Location: 74342 - 75640 (-)
Type: CAZyme
Location: 74342 - 75640 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_2973_65
Type: TC
Location: 75798 - 76679 (-)
Type: TC
Location: 75798 - 76679 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_2973_66
Type: TC
Location: 76695 - 77594 (-)
Type: TC
Location: 76695 - 77594 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_2973_67
Type: TC
Location: 77625 - 79298 (-)
Type: TC
Location: 77625 - 79298 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_2973_68
Type: TC
Location: 79568 - 81274 (+)
Type: TC
Location: 79568 - 81274 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Robinsoniella
Species
Robinsoniella sp900555455
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.