Cluster: ShaoY_2019_ERR3405831_bin.2_CGC56
🧬 Cluster Details
- Gene Count: 9
- CAZyme Count: 2
- Substrate:
- Genome ID: ShaoY_2019_ERR3405831_bin.2
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | ShaoY_2019_ERR3405831_bin.2_k141_2973 | ShaoY_2019_ERR3405831_bin.2_k141_2973_43 | 46118 | 48862 | - | CBM67 | GH78 |
| pfam | ShaoY_2019_ERR3405831_bin.2_k141_2973 | ShaoY_2019_ERR3405831_bin.2_k141_2973_44 | 49127 | 50230 | - | Lactamase_B_2 |
| pfam | ShaoY_2019_ERR3405831_bin.2_k141_2973 | ShaoY_2019_ERR3405831_bin.2_k141_2973_45 | 50233 | 51231 | - | URO-D |
| TC | ShaoY_2019_ERR3405831_bin.2_k141_2973 | ShaoY_2019_ERR3405831_bin.2_k141_2973_46 | 51271 | 52257 | - | 3.A.1.2.1 |
| TC | ShaoY_2019_ERR3405831_bin.2_k141_2973 | ShaoY_2019_ERR3405831_bin.2_k141_2973_47 | 52223 | 53767 | - | 3.A.1.2.20 |
| pfam | ShaoY_2019_ERR3405831_bin.2_k141_2973 | ShaoY_2019_ERR3405831_bin.2_k141_2973_48 | 53799 | 54965 | - | Peripla_BP_4 |
| TF | ShaoY_2019_ERR3405831_bin.2_k141_2973 | ShaoY_2019_ERR3405831_bin.2_k141_2973_49 | 55316 | 55975 | + | GntR |
| TC | ShaoY_2019_ERR3405831_bin.2_k141_2973 | ShaoY_2019_ERR3405831_bin.2_k141_2973_50 | 56011 | 57846 | + | 9.B.33.1.1 |
| CAZyme | ShaoY_2019_ERR3405831_bin.2_k141_2973 | ShaoY_2019_ERR3405831_bin.2_k141_2973_51 | 58032 | 59738 | - | GH13_18 |
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_2973_43
Type: CAZyme
Location: 46118 - 48862 (-)
Type: CAZyme
Location: 46118 - 48862 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_2973_44
Type: pfam
Location: 49127 - 50230 (-)
Type: pfam
Location: 49127 - 50230 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_2973_45
Type: pfam
Location: 50233 - 51231 (-)
Type: pfam
Location: 50233 - 51231 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_2973_46
Type: TC
Location: 51271 - 52257 (-)
Type: TC
Location: 51271 - 52257 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_2973_47
Type: TC
Location: 52223 - 53767 (-)
Type: TC
Location: 52223 - 53767 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_2973_48
Type: pfam
Location: 53799 - 54965 (-)
Type: pfam
Location: 53799 - 54965 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_2973_49
Type: TF
Location: 55316 - 55975 (+)
Type: TF
Location: 55316 - 55975 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_2973_50
Type: TC
Location: 56011 - 57846 (+)
Type: TC
Location: 56011 - 57846 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_2973_51
Type: CAZyme
Location: 58032 - 59738 (-)
Type: CAZyme
Location: 58032 - 59738 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Robinsoniella
Species
Robinsoniella sp900555455
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.