Cluster: ShaoY_2019_ERR3405831_bin.2_CGC55
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: ShaoY_2019_ERR3405831_bin.2
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | ShaoY_2019_ERR3405831_bin.2_k141_2973 | ShaoY_2019_ERR3405831_bin.2_k141_2973_9 | 11142 | 13316 | + | CBM67 | GH78 |
| TC | ShaoY_2019_ERR3405831_bin.2_k141_2973 | ShaoY_2019_ERR3405831_bin.2_k141_2973_10 | 13504 | 14517 | - | 9.B.10.1.1 |
| pfam | ShaoY_2019_ERR3405831_bin.2_k141_2973 | ShaoY_2019_ERR3405831_bin.2_k141_2973_11 | 14614 | 15480 | - | DUF1980 | DUF1980_C |
| pfam | ShaoY_2019_ERR3405831_bin.2_k141_2973 | ShaoY_2019_ERR3405831_bin.2_k141_2973_12 | 15477 | 17039 | - | cobW | ArsP_1 |
| TC | ShaoY_2019_ERR3405831_bin.2_k141_2973 | ShaoY_2019_ERR3405831_bin.2_k141_2973_13 | 17054 | 17854 | - | 3.A.1.15.3 |
| TC | ShaoY_2019_ERR3405831_bin.2_k141_2973 | ShaoY_2019_ERR3405831_bin.2_k141_2973_14 | 17851 | 18513 | - | 3.A.1.15.11 |
| TC | ShaoY_2019_ERR3405831_bin.2_k141_2973 | ShaoY_2019_ERR3405831_bin.2_k141_2973_15 | 18581 | 19663 | - | 3.A.1.15.11 |
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_2973_9
Type: CAZyme
Location: 11142 - 13316 (+)
Type: CAZyme
Location: 11142 - 13316 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_2973_10
Type: TC
Location: 13504 - 14517 (-)
Type: TC
Location: 13504 - 14517 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_2973_11
Type: pfam
Location: 14614 - 15480 (-)
Type: pfam
Location: 14614 - 15480 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_2973_12
Type: pfam
Location: 15477 - 17039 (-)
Type: pfam
Location: 15477 - 17039 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_2973_13
Type: TC
Location: 17054 - 17854 (-)
Type: TC
Location: 17054 - 17854 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_2973_14
Type: TC
Location: 17851 - 18513 (-)
Type: TC
Location: 17851 - 18513 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_2973_15
Type: TC
Location: 18581 - 19663 (-)
Type: TC
Location: 18581 - 19663 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Robinsoniella
Species
Robinsoniella sp900555455
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.