Cluster: ShaoY_2019_ERR3405831_bin.2_CGC52
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: ShaoY_2019_ERR3405831_bin.2
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | ShaoY_2019_ERR3405831_bin.2_k141_2928 | ShaoY_2019_ERR3405831_bin.2_k141_2928_80 | 104580 | 105824 | - | GH29 |
| TF | ShaoY_2019_ERR3405831_bin.2_k141_2928 | ShaoY_2019_ERR3405831_bin.2_k141_2928_81 | 105839 | 106909 | - | LacI |
| CAZyme | ShaoY_2019_ERR3405831_bin.2_k141_2928 | ShaoY_2019_ERR3405831_bin.2_k141_2928_82 | 107001 | 109019 | - | GH151 |
| TC | ShaoY_2019_ERR3405831_bin.2_k141_2928 | ShaoY_2019_ERR3405831_bin.2_k141_2928_83 | 109033 | 109857 | - | 3.A.1.1.25 |
| TC | ShaoY_2019_ERR3405831_bin.2_k141_2928 | ShaoY_2019_ERR3405831_bin.2_k141_2928_84 | 109868 | 110755 | - | 3.A.1.1.20 |
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_2928_80
Type: CAZyme
Location: 104580 - 105824 (-)
Type: CAZyme
Location: 104580 - 105824 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_2928_81
Type: TF
Location: 105839 - 106909 (-)
Type: TF
Location: 105839 - 106909 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_2928_82
Type: CAZyme
Location: 107001 - 109019 (-)
Type: CAZyme
Location: 107001 - 109019 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_2928_83
Type: TC
Location: 109033 - 109857 (-)
Type: TC
Location: 109033 - 109857 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_2928_84
Type: TC
Location: 109868 - 110755 (-)
Type: TC
Location: 109868 - 110755 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Robinsoniella
Species
Robinsoniella sp900555455
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.