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Cluster: ShaoY_2019_ERR3405831_bin.2_CGC47

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC ShaoY_2019_ERR3405831_bin.2_k141_2754 ShaoY_2019_ERR3405831_bin.2_k141_2754_54 54421 56184 + 9.B.33.1.1
TF ShaoY_2019_ERR3405831_bin.2_k141_2754 ShaoY_2019_ERR3405831_bin.2_k141_2754_55 56297 57880 + HTH_AraC | HTH_AraC
STP ShaoY_2019_ERR3405831_bin.2_k141_2754 ShaoY_2019_ERR3405831_bin.2_k141_2754_56 57968 59341 + SBP_bac_1
TC ShaoY_2019_ERR3405831_bin.2_k141_2754 ShaoY_2019_ERR3405831_bin.2_k141_2754_57 59693 60622 + 3.A.1.1.32
TC ShaoY_2019_ERR3405831_bin.2_k141_2754 ShaoY_2019_ERR3405831_bin.2_k141_2754_58 60612 61484 + 3.A.1.1.18
CAZyme ShaoY_2019_ERR3405831_bin.2_k141_2754 ShaoY_2019_ERR3405831_bin.2_k141_2754_59 61580 64393 + CBM67 | GH78
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_2754_54
Type: TC
Location: 54421 - 56184 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_2754_55
Type: TF
Location: 56297 - 57880 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_2754_56
Type: STP
Location: 57968 - 59341 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_2754_57
Type: TC
Location: 59693 - 60622 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_2754_58
Type: TC
Location: 60612 - 61484 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_2754_59
Type: CAZyme
Location: 61580 - 64393 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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