Cluster: ShaoY_2019_ERR3405831_bin.2_CGC46
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: ShaoY_2019_ERR3405831_bin.2
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ShaoY_2019_ERR3405831_bin.2_k141_2754 | ShaoY_2019_ERR3405831_bin.2_k141_2754_32 | 31060 | 32004 | + | 3.A.1.1.10 |
| TC | ShaoY_2019_ERR3405831_bin.2_k141_2754 | ShaoY_2019_ERR3405831_bin.2_k141_2754_33 | 32018 | 32932 | + | 3.A.1.1.29 |
| STP | ShaoY_2019_ERR3405831_bin.2_k141_2754 | ShaoY_2019_ERR3405831_bin.2_k141_2754_34 | 33073 | 34677 | + | SBP_bac_1 |
| pfam | ShaoY_2019_ERR3405831_bin.2_k141_2754 | ShaoY_2019_ERR3405831_bin.2_k141_2754_35 | 34875 | 36596 | + | His_kinase |
| CAZyme | ShaoY_2019_ERR3405831_bin.2_k141_2754 | ShaoY_2019_ERR3405831_bin.2_k141_2754_36 | 36690 | 38687 | - | GH31_4 |
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_2754_32
Type: TC
Location: 31060 - 32004 (+)
Type: TC
Location: 31060 - 32004 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_2754_33
Type: TC
Location: 32018 - 32932 (+)
Type: TC
Location: 32018 - 32932 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_2754_34
Type: STP
Location: 33073 - 34677 (+)
Type: STP
Location: 33073 - 34677 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_2754_35
Type: pfam
Location: 34875 - 36596 (+)
Type: pfam
Location: 34875 - 36596 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_2754_36
Type: CAZyme
Location: 36690 - 38687 (-)
Type: CAZyme
Location: 36690 - 38687 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Robinsoniella
Species
Robinsoniella sp900555455
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.