Cluster: ShaoY_2019_ERR3405831_bin.2_CGC42
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: ShaoY_2019_ERR3405831_bin.2
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ShaoY_2019_ERR3405831_bin.2_k141_2538 | ShaoY_2019_ERR3405831_bin.2_k141_2538_180 | 240502 | 241440 | + | 3.A.1.1.10 |
| TC | ShaoY_2019_ERR3405831_bin.2_k141_2538 | ShaoY_2019_ERR3405831_bin.2_k141_2538_181 | 241453 | 242361 | + | 3.A.1.1.29 |
| pfam | ShaoY_2019_ERR3405831_bin.2_k141_2538 | ShaoY_2019_ERR3405831_bin.2_k141_2538_182 | 242453 | 245029 | + | Transglut_core |
| CAZyme | ShaoY_2019_ERR3405831_bin.2_k141_2538 | ShaoY_2019_ERR3405831_bin.2_k141_2538_183 | 245151 | 246476 | + | GH29 |
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_2538_180
Type: TC
Location: 240502 - 241440 (+)
Type: TC
Location: 240502 - 241440 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_2538_181
Type: TC
Location: 241453 - 242361 (+)
Type: TC
Location: 241453 - 242361 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_2538_182
Type: pfam
Location: 242453 - 245029 (+)
Type: pfam
Location: 242453 - 245029 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_2538_183
Type: CAZyme
Location: 245151 - 246476 (+)
Type: CAZyme
Location: 245151 - 246476 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Robinsoniella
Species
Robinsoniella sp900555455
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.