Cluster: ShaoY_2019_ERR3405831_bin.2_CGC37
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 1
- Substrate:
- Genome ID: ShaoY_2019_ERR3405831_bin.2
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ShaoY_2019_ERR3405831_bin.2_k141_2538 | ShaoY_2019_ERR3405831_bin.2_k141_2538_27 | 35935 | 37638 | + | 3.A.1.5.38 |
| TC | ShaoY_2019_ERR3405831_bin.2_k141_2538 | ShaoY_2019_ERR3405831_bin.2_k141_2538_28 | 37809 | 38822 | + | 3.A.1.5.20 |
| TC | ShaoY_2019_ERR3405831_bin.2_k141_2538 | ShaoY_2019_ERR3405831_bin.2_k141_2538_29 | 38822 | 39673 | + | 3.A.1.5.2 |
| TC | ShaoY_2019_ERR3405831_bin.2_k141_2538 | ShaoY_2019_ERR3405831_bin.2_k141_2538_30 | 39714 | 40703 | + | 3.A.1.5.37 |
| TC | ShaoY_2019_ERR3405831_bin.2_k141_2538 | ShaoY_2019_ERR3405831_bin.2_k141_2538_31 | 40706 | 41317 | + | 3.A.1.5.3 |
| pfam | ShaoY_2019_ERR3405831_bin.2_k141_2538 | ShaoY_2019_ERR3405831_bin.2_k141_2538_32 | 41447 | 41917 | - | DUF4358 |
| pfam | ShaoY_2019_ERR3405831_bin.2_k141_2538 | ShaoY_2019_ERR3405831_bin.2_k141_2538_33 | 41929 | 42963 | - | Lipase_GDSL_2 |
| TC | ShaoY_2019_ERR3405831_bin.2_k141_2538 | ShaoY_2019_ERR3405831_bin.2_k141_2538_34 | 43109 | 44530 | + | 2.A.50.2.1 |
| pfam | ShaoY_2019_ERR3405831_bin.2_k141_2538 | ShaoY_2019_ERR3405831_bin.2_k141_2538_35 | 44543 | 45682 | + | DHHW | ALGX |
| CAZyme | ShaoY_2019_ERR3405831_bin.2_k141_2538 | ShaoY_2019_ERR3405831_bin.2_k141_2538_36 | 45757 | 46725 | + | GH109 |
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_2538_27
Type: TC
Location: 35935 - 37638 (+)
Type: TC
Location: 35935 - 37638 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_2538_28
Type: TC
Location: 37809 - 38822 (+)
Type: TC
Location: 37809 - 38822 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_2538_29
Type: TC
Location: 38822 - 39673 (+)
Type: TC
Location: 38822 - 39673 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_2538_30
Type: TC
Location: 39714 - 40703 (+)
Type: TC
Location: 39714 - 40703 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_2538_31
Type: TC
Location: 40706 - 41317 (+)
Type: TC
Location: 40706 - 41317 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_2538_32
Type: pfam
Location: 41447 - 41917 (-)
Type: pfam
Location: 41447 - 41917 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_2538_33
Type: pfam
Location: 41929 - 42963 (-)
Type: pfam
Location: 41929 - 42963 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_2538_34
Type: TC
Location: 43109 - 44530 (+)
Type: TC
Location: 43109 - 44530 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_2538_35
Type: pfam
Location: 44543 - 45682 (+)
Type: pfam
Location: 44543 - 45682 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_2538_36
Type: CAZyme
Location: 45757 - 46725 (+)
Type: CAZyme
Location: 45757 - 46725 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Robinsoniella
Species
Robinsoniella sp900555455
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.