Cluster: ShaoY_2019_ERR3405831_bin.2_CGC31
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 2
- Substrate:
- Genome ID: ShaoY_2019_ERR3405831_bin.2
- CGC Family ID: CGCFAM_02637
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | ShaoY_2019_ERR3405831_bin.2_k141_2263 | ShaoY_2019_ERR3405831_bin.2_k141_2263_20 | 22866 | 26927 | - | GH43_26 |
| CAZyme | ShaoY_2019_ERR3405831_bin.2_k141_2263 | ShaoY_2019_ERR3405831_bin.2_k141_2263_21 | 27067 | 34809 | - | GH43_22 | GH43_22 |
| pfam | ShaoY_2019_ERR3405831_bin.2_k141_2263 | ShaoY_2019_ERR3405831_bin.2_k141_2263_22 | 35095 | 36495 | - | Methyltr_RsmB-F | Methyltranf_PUA | Methyltr_RsmF_N | RsmF_methylt_CI |
| pfam | ShaoY_2019_ERR3405831_bin.2_k141_2263 | ShaoY_2019_ERR3405831_bin.2_k141_2263_23 | 36569 | 40678 | - | FtsX | FtsX |
| TC | ShaoY_2019_ERR3405831_bin.2_k141_2263 | ShaoY_2019_ERR3405831_bin.2_k141_2263_24 | 40686 | 41405 | - | 3.A.1.122.14 |
| pfam | ShaoY_2019_ERR3405831_bin.2_k141_2263 | ShaoY_2019_ERR3405831_bin.2_k141_2263_25 | 41676 | 42992 | + | Gln-synt_C | Gln-synt_N |
| STP | ShaoY_2019_ERR3405831_bin.2_k141_2263 | ShaoY_2019_ERR3405831_bin.2_k141_2263_26 | 43031 | 43603 | + | ANTAR | Response_reg |
| TC | ShaoY_2019_ERR3405831_bin.2_k141_2263 | ShaoY_2019_ERR3405831_bin.2_k141_2263_27 | 43748 | 45148 | - | 2.A.25.1.4 |
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_2263_20
Type: CAZyme
Location: 22866 - 26927 (-)
Type: CAZyme
Location: 22866 - 26927 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_2263_21
Type: CAZyme
Location: 27067 - 34809 (-)
Type: CAZyme
Location: 27067 - 34809 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_2263_22
Type: pfam
Location: 35095 - 36495 (-)
Type: pfam
Location: 35095 - 36495 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_2263_23
Type: pfam
Location: 36569 - 40678 (-)
Type: pfam
Location: 36569 - 40678 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_2263_24
Type: TC
Location: 40686 - 41405 (-)
Type: TC
Location: 40686 - 41405 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_2263_25
Type: pfam
Location: 41676 - 42992 (+)
Type: pfam
Location: 41676 - 42992 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_2263_26
Type: STP
Location: 43031 - 43603 (+)
Type: STP
Location: 43031 - 43603 (+)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_2263_27
Type: TC
Location: 43748 - 45148 (-)
Type: TC
Location: 43748 - 45148 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Robinsoniella
Species
Robinsoniella sp900555455
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.