Cluster: ShaoY_2019_ERR3405831_bin.2_CGC30
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: ShaoY_2019_ERR3405831_bin.2
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | ShaoY_2019_ERR3405831_bin.2_k141_2263 | ShaoY_2019_ERR3405831_bin.2_k141_2263_1 | 157 | 2385 | - | GH95 |
| TC | ShaoY_2019_ERR3405831_bin.2_k141_2263 | ShaoY_2019_ERR3405831_bin.2_k141_2263_2 | 2772 | 3593 | - | 3.A.1.1.45 |
| TC | ShaoY_2019_ERR3405831_bin.2_k141_2263 | ShaoY_2019_ERR3405831_bin.2_k141_2263_3 | 3593 | 4471 | - | 3.A.1.1.7 |
| STP | ShaoY_2019_ERR3405831_bin.2_k141_2263 | ShaoY_2019_ERR3405831_bin.2_k141_2263_4 | 4558 | 6000 | - | SBP_bac_1 |
| TC | ShaoY_2019_ERR3405831_bin.2_k141_2263 | ShaoY_2019_ERR3405831_bin.2_k141_2263_5 | 6212 | 8017 | + | 8.A.59.2.1 |
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_2263_1
Type: CAZyme
Location: 157 - 2385 (-)
Type: CAZyme
Location: 157 - 2385 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_2263_2
Type: TC
Location: 2772 - 3593 (-)
Type: TC
Location: 2772 - 3593 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_2263_3
Type: TC
Location: 3593 - 4471 (-)
Type: TC
Location: 3593 - 4471 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_2263_4
Type: STP
Location: 4558 - 6000 (-)
Type: STP
Location: 4558 - 6000 (-)
Gene ID: ShaoY_2019_ERR3405831_bin.2_k141_2263_5
Type: TC
Location: 6212 - 8017 (+)
Type: TC
Location: 6212 - 8017 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Robinsoniella
Species
Robinsoniella sp900555455
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.